BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891563

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41010.1 | Symbols: NRPB12, NRPD12, NRPE12 | DNA directed RN...   246    4e-65


> AT5G41010.1 | Symbols: NRPB12, NRPD12, NRPE12 | DNA directed 
RNA polymerase, 7 kDa subunit | chr5:16424050-16424952 FORWARD 
LENGTH=187
Length=187

 Score =  246 bits (133),  Expect = 4e-65
 Identities = 151/159 (95%), Gaps = 3/159 (2%)
 Strand=Plus/Plus

Query  1    ATGGAACCAGCACAGCCCGAACCCGTTACTTACGTCTGTGGAGATTGTGGACAAGAGAAC  60
            ||||| ||||  | |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  1    ATGGATCCAG--C-GCCCGAACCCGTTACTTACGTCTGCGGAGATTGTGGTCAAGAGAAC  57

Query  61   ACTTTGAAGCCTGGGGATGTGATCCAATGCAGAGAGTGTGGCTACCGTATTCTCTACAAG  120
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  58   ACTTTGAAGTCTGGGGATGTGATCCAATGCAGAGAGTGTGGGTACCGTATTCTCTACAAG  117

Query  121  AAGCGTACCCGTAGAGTTGTTCAATACGAAGCTCGCTGA  159
            |||||||||||||||||||||||||||||||||||||||
Sbjct  118  AAGCGTACCCGTAGAGTTGTTCAATACGAAGCTCGCTGA  156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6840983736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5