BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891588

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21065.1 | Symbols:  | unknown protein; INVOLVED IN: biologi...   161    2e-39


> AT1G21065.1 | Symbols:  | unknown protein; INVOLVED IN: biological_process 
unknown; LOCATED IN: chloroplast; EXPRESSED IN: 
22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS 
InterPro DOMAIN/s: Uncharacterised protein family UPF0047 
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins 
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa 
- 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes 
- 1191 (source: NCBI BLink). | chr1:7374210-7375789 FORWARD 
LENGTH=799
Length=799

 Score =  161 bits (87),  Expect = 2e-39
 Identities = 91/93 (98%), Gaps = 0/93 (0%)
 Strand=Plus/Plus

Query  88   CAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGAT  147
            |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  358  CAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGAT  417

Query  148  ACTGAGACTTTCTTGAACAGGATTGTTCCTGAG  180
            |||||||||||||||||||||||||||||||||
Sbjct  418  ACTGAGACTTTCTTGAACAGGATTGTTCCTGAG  450


 Score = 99.0 bits (53),  Expect = 2e-20
 Identities = 59/62 (95%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  24   GGGCTCAGAAAACCTTCACACTTCCGCCGCTACGTCGTGGATGTCATCTTATTACTCCAA  83
            |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct  233  GGGCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAA  292

Query  84   AG  85
            ||
Sbjct  293  AG  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5