BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891601

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40750.1 | Symbols:  | FBD / Leucine Rich Repeat domains con...   335    2e-91


> AT5G40750.1 | Symbols:  | FBD / Leucine Rich Repeat domains containing 
protein | chr5:16308356-16309819 FORWARD LENGTH=894
Length=894

 Score =  335 bits (181),  Expect = 2e-91
 Identities = 304/360 (84%), Gaps = 22/360 (6%)
 Strand=Plus/Plus

Query  14   TTTTGTTAGATGTTTCTTCTCCGGTATGCCTCCCATCC-CTCAAACGTCTTCACCTTGTC  72
            ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct  153  TTTTG-TAGATGTTTCTTCTCCGGTATGCCTCCCA-CCTCTCAAACGTCTTCTCCTTGTC  210

Query  73   TTTGTGGTATACAAAGATGAAGATTCTGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTC  132
            |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  211  TTTGTGGTATACAAAGATGATGATTATGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTC  270

Query  133  GAAGAATTGTATGTGGTGCGTCGACATAACCAAGACAATGTGACCAAGTTTAGTGTAAAA  192
            ||| | ||||||||| |||    |||| | |||||||||||||| |||||||||||||||
Sbjct  271  GAATATTTGTATGTGTTGCA---ACATGAGCAAGACAATGTGACAAAGTTTAGTGTAAAA  327

Query  193  GTGCCATCTTTAGAGACCTTAACGTATTGTAAT-GTGAAACCAAAAGTAGTCGGCGGAGA  251
            || |||||||||||||| ||||  |||| | || | |||| |||||||| | | || || 
Sbjct  328  GTTCCATCTTTAGAGACTTTAATATATTTTTATCG-GAAAGCAAAAGTACTTGACG-AG-  384

Query  252  AGATGTAGAGGATATTGGAGGATCTTTGGTCATAGATTCAGAAAATTT-AAAGGAATTCG  310
             ||   |||   ||||||| ||||||||| |||||||||  || |||| |||| ||||| 
Sbjct  385  -GA---AGA---TATTGGAAGATCTTTGGCCATAGATTCT-AAGATTTTAAAGAAATTCT  436

Query  311  CCATCGCAGATACAT-CGACAAACTCTTGCTCGATTGAGAACAAGCCCTCGCCTTGGTAA  369
             ||||||||||  || | |||||||| ||||||||||||||||| || | || ||| |||
Sbjct  437  TCATCGCAGATT-ATTCTACAAACTCGTGCTCGATTGAGAACAAACC-TAGCTTTGATAA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5