BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891613
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40645.1 | Symbols: | RPM1-interacting protein 4 (RIN4) fam... 374 2e-103
> AT5G40645.1 | Symbols: | RPM1-interacting protein 4 (RIN4) family
protein | chr5:16280283-16280972 REVERSE LENGTH=438
Length=438
Score = 374 bits (202), Expect = 2e-103
Identities = 218/225 (97%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCGAATAATCAACAACGTCAACAACAAGATCGACCATTACCAAAATTTGGAGAA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 90 ATGGCATCGAATAATCAACAACGACAACAACAAGATCGACCATTACCAAAATTTGGAGAA 149
Query 61 TGGGATGTGAACGATCCAGCATCAGCCGAAGGATTTACGGTTATATTCGCTAAAGCTCGA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TGGGACGTGAACGATCCAGCATCAGCCGAAGGATTTACGGTTATATTCGCTAAAGCTCGA 209
Query 121 GACGACAAAAAGACAAACGCAAGTGGTCGTGCCACCTCTCAACGCCGTGACAATAACAAT 180
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 210 GACGACAAAAAGACAAACGCAAGTGGTCGTGCCGCCTCACAACGCCGTGACAATAACAA- 268
Query 181 AAATCTCAAGATGAACCTACGAAGAAACGGTTCTGCTGTTTCTGA 225
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 A--TCTCAAGATGAACCTACGAAGAAACGGTTCTGCTGTTTCTGA 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10103817549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5