BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891656
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40380.1 | Symbols: CRK42 | cysteine-rich RLK (RECEPTOR-like... 3070 0.0
> AT5G40380.1 | Symbols: CRK42 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 42 | chr5:16151772-16155177 FORWARD LENGTH=2444
Length=2444
Score = 3070 bits (1662), Expect = 0.0
Identities = 1859/1957 (95%), Gaps = 2/1957 (0%)
Strand=Plus/Plus
Query 1 ATGCCTTGCCTCACAAAAACAATACCGTTTCATTATGTCATCATTGTTTATTCCTTCTTC 60
|||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 350 ATGCGTTGCCTCACAAAAACAAGATCGTTTCATTATGTCATCATTTTTTATTCCTTCTTC 409
Query 61 TTTTTACCGTTCTTGTCGTCCTCCGACGACGATCTAAGAACCACCGTCTCTGGTCTTTTC 120
|||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct 410 TTTTTACCGTTCTTGTCGTCCTCCTCCGACGATCAAAGAACCACCGTCTCCGGTCTTTTC 469
Query 121 TGCGGCGGACGAAGCAAATCCTCCACAGATCCAAATTACATCCCAACGTTCGTCGAAGAT 180
|| |||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 470 TGTGGCGGACGTAGCAAATCCTCCGCAGATCCAAACTACATCCCAACTTTCGTCGAAGAT 529
Query 181 ATGCATTCACTATCTCTTAAACTAACTACACGCCGTTTCGCAACAGAATCATTAAACTCC 240
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 530 ATGCATTCACTATCTCTAAAACTAACTACACGCCGTTTCGCAACTGAATCATTAAACTCC 589
Query 241 ACGCCGTCTATCTACGCACTGATCCAATGCCACGACGATCTTTCACTGTCCAATTGTCAG 300
|| | ||||||||||| ||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 590 ACTACATCTATCTACGCTCTGATCCAATGCCACGACGATCTCTCACCGTCCGATTGTCAG 649
Query 301 CTCTGTTACGCGATTGCACGCACGCGCCTCCCTCGTTGTCTACCTTCTTCCTCCGCAAGA 360
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 650 CTCTGTTACGCGATTGCACGCACCCGCATCCCTCGTTGTCTCCCTTCTTCCTCCGCAAGA 709
Query 361 ATCTTCCTCGACGGTTGTTTCCTCCGTTATGAAACTTACGAGTTTTACGATGAATCAGTC 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 710 ATCTTCCTCGACGGTTGTTTCCTCCGTTACGAAACTTACGAGTTTTACGATGAATCAGTC 769
Query 421 TCCGATACGTCCGATAGTTTTTCTTGTAGCAACGACACCGTTTTGGATCCTCTGTTCGGG 480
|||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 770 TCCGATGCGTCGGATAGTTTTTCTTGTAGCAACGACACCGTTTTGGATCCTCGGTTCGGG 829
Query 481 TTTCGCGTTTCGGAAACCGCGGTGAGAGTCGCGGTTAGAAAAGGAGGGTTTGGAGTCGCC 540
|||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 830 TTTCAAGTTTCGGAAACTGCGGCGAGAGTCGCGGTTAGAAAAGGAGGGTTTGGAGTCGCC 889
Query 541 GGAGAGAGTGGAGTACACGCGCTTGCTCAGTGTTGGGAGAGTTTGGGGAAAGAAGATTGT 600
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGAGAGAATGGAGTACACGCTCTTGCTCAGTGTTGGGAGAGTTTGGGGAAAGAAGATTGT 949
Query 601 AGGGTTTGTTTGGAGAAAGCTATTAAAGAAGTGAAACGATGCGTTTCGAGGAGAGAAGGA 660
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 950 AGGGTTTGTTTGGAGAAAGCTGTTAAAGAAGTGAAACGCTGCGTTTCGAGGAGAGAAGGA 1009
Query 661 AGAGCGATGAATACAGGGTGTTATCTTAGATACTCTGATCATAAATTCTATAATGGTGAT 720
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGAGCTATGAATACAGGATGTTATCTTAGATACTCTGATCATAAATTCTATAATGGTGAT 1069
Query 721 GGACATCATAATTTTCATGTGTTTTTTAACAAAGGTGTCATCGTGGCTATAGTCTTGACA 780
||||||||||| ||||||||| ||||||||||||| |||||||| ||||| |||||||||
Sbjct 1070 GGACATCATAAATTTCATGTGCTTTTTAACAAAGGAGTCATCGTTGCTATTGTCTTGACA 1129
Query 781 ACGTCAGCATTCGTCATGCTCATTCTCTTGGCAACGTATGTCATTATGATAAAAGTATCA 840
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1130 ACGTCAGCATTCGTCATGCTCATCCTCTTGGCAACGTATGTCATTATGACAAAAGTATCA 1189
Query 841 AAGACCAAGCAAGAACAACGAAACTTGGGTCTAGTTTCGAGAAAATTCAACAACTCAAAG 900
||||| || |||||| || ||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1190 AAGACTAAACAAGAAAAAAGAAACTTAGGTTTGGTTTCGAGAAAATTCAACAACTCAAAG 1249
Query 901 ACGAAGTTCAAGTACGAGACTCTAGAGAAGGCTACAGATTACTTCAGCCCCAAGAAAATA 960
|||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 1250 ACGAAGTTCAAGTACGAGACTCTAGAGAAGGCAACAGATTACTTCAGTCACAAGAAAATG 1309
Query 961 CTAGGGCAAGGAGGAAATGGCACCGTTTTCTTAGGAATCCTTCCAAATGGCAAGAACGTG 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1310 CTAGGGCAAGGAGGAAATGGCACCGTTTTCTTAGGAATCCTTCCAAATGGTAAGAACGTG 1369
Query 1021 GCCGTGAAGAGATTAGTGTTCAACACAAGAGAATGGGTAGAAGAATTCTTCAACGAAGTG 1080
|| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1370 GCTGTGAAAAGATTAGTGTTTAACACAAGAGACTGGGTAGAAGAATTCTTCAACGAAGTG 1429
Query 1081 AATCTAATTAGTGGAATCCAACATAAGAACCTCGTCAAGCTTCTTGGTTGTAGTATTGAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1430 AATCTAATTAGTGGAATCCAACATAAGAACCTCGTCAAGCTTCTTGGTTGTAGCATTGAA 1489
Query 1141 GGACCCGAGAGTCTCTTGGTCTACGAATACGTACCTAACAAAAGCCTCGACCAATTTCTC 1200
||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1490 GGACCGGAGAGTCTCTTGGTCTATGAGTACGTGCCTAACAAAAGCCTCGACCAATTTCTC 1549
Query 1201 TTTGATGAGACTCAAAGCAAGGTCTTAAACTGGAGTCAGAGGCTAAACATAATCCTGGGA 1260
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1550 TTTGATGAGAGTCAAAGCAAGGTCTTAAACTGGAGCCAGAGGCTAAACATAATCCTTGGA 1609
Query 1261 ACAGCGGAGGGACTGGCTTACCTACACGGTGGATCTCCGGTGAGGATTATTCATCGTGAC 1320
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1610 ACAGCGGAGGGACTGGCTTACCTACACGGTGGATCTCCCGTGAGGATTATTCATCGTGAC 1669
Query 1321 ATCAAAACTAGTAATGTTCTTCTAGACGACCAGCTCAATCCAAAGATCGCTGATTTCGGT 1380
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1670 ATCAAAACCAGTAATGTTCTTCTAGACGACCAGCTCAATCCTAAGATCGCTGATTTCGGT 1729
Query 1381 TTGGCTCGATGTTTTGGTCTGGACAAAACTCATCTTAGCACCGGCATCGCAGGAACTCTA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TTGGCTCGATGTTTTGGTCTGGACAAAACTCATCTTAGCACCGGCATCGCAGGAACTCTA 1789
Query 1441 GGTTATATGGCTCCAGAGTATGTTGTTAGAGGACAGTTAACGGAGAAAGCAGACGTTTAT 1500
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GGTTACATGGCTCCAGAGTATGTTGTTAGAGGACAGTTAACGGAGAAAGCAGACGTTTAT 1849
Query 1501 AGCTTCGGAGTTCTTGTTCTCGAGATTGCTTGTGGAACAAGAAACAACGCTTTCGAACCA 1560
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 1850 AGCTTCGGAGTTCTTGTTCTCGAGATTGCTTGTGGAACAAGAATCAATGCTTTCGTACCA 1909
Query 1561 -ATGACAGGTCATCTCCTACAAAGAGTCTGGAACCTCTATACACTGAATAGATTGGTCGA 1619
| ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1910 GA-GACAGGTCACCTCCTACAAAGAGTCTGGAACCTTTATACACTGAATAGACTGGTCGA 1968
Query 1620 AGCTCTTGACCAATGTCTAAAAGATGAGTTTCTTCATGTGCAAGGCAGCGAAGATGAAGC 1679
||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1969 AGCTCTTGACCCATGTCTAAAAGATGAGTTTCTTCAAGTGCAAGGCAGCGAAGCTGAAGC 2028
Query 1680 TTGTAAAGTTCTTCGTGTGGGATTGTTATGCACACAAGCTTCTCCATGGCTGAGACCATC 1739
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||
Sbjct 2029 TTGTAAAGTTCTTCGTGTGGGATTGTTATGCACACAAGCTTCTCCGTCGCTAAGACCGTC 2088
Query 1740 GATGGAAGAAGTGATTCGTATGTTAACCGAGAGAGATTACCCGATTCCATCTCCAACCAA 1799
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2089 GATGGAAGAAGTGATCCGTATGCTAACCGAGAGAGATTACCCGATTCCATCTCCAACCAG 2148
Query 1800 TCCTCCCTTCTTGAGGATTAGCTCTCTAACTACAGACCTAGAGGGCAGCAGTACTATATC 1859
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2149 TCCTCCCTTCTTGAGGGTTAGCTCTCTAACTACAGACCTAGAGGGCAGTAGTACTATATC 2208
Query 1860 TCAAAGCACCAATAGTACTACAACGTTTAACACGATGGTCAAAACCGATCAAGCTTCTTA 1919
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2209 TCATAGCACCAATAGTACTACGACGTTTAACACGATGGTCAAAACCGATCAAGCTTCTTA 2268
Query 1920 TACCTCTTCAGAATCTTCTACTACTCGTACTATCTAA 1956
||| |||||||||||||||||||||||||| ||||||
Sbjct 2269 TACTTCTTCAGAATCTTCTACTACTCGTACAATCTAA 2305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96887051850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5