BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891703

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   342    8e-94
  AT3G44130.1 | Symbols:  | F-box and associated interaction doma...   139    1e-32
  AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like su...   124    3e-28


> AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Ribosomal protein S5 domain 2-like superfamily protein 
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; 
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI 
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453

 Score =  342 bits (185),  Expect = 8e-94
 Identities = 225/244 (92%), Gaps = 3/244 (1%)
 Strand=Plus/Plus

Query  7    AATACAGACCTAAAGCAGGAACAAAGAAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAG  66
            ||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct  92   AATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAATGCTGAGAAGGCTTG-TTTGAAG  150

Query  67   TCATATGGAAGCCTTAAGCCGGATAGATTGGTAATCGTAAATGCGTTTCGTTGTTCAGAA  126
            ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||
Sbjct  151  TCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAA  210

Query  127  -GAAGGCTTGTTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTATAAAACGATACTCAAAAG  185
             || |||||||||||| ||||||||||||||||||  |||||| |||||||||| |||||
Sbjct  211  AGA-GGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAG  269

Query  186  GACGTTACAGAGTATTTGTGTTTTGACAGTTGTTCCAAATAGCACCGCCTCAGTGATAAT  245
            |||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||| ||
Sbjct  270  GACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTAT  329

Query  246  TCAG  249
            ||||
Sbjct  330  TCAG  333


> AT3G44130.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942

 Score =  139 bits (75),  Expect = 1e-32
 Identities = 91/98 (93%), Gaps = 3/98 (3%)
 Strand=Plus/Plus

Query  1    CTGCAGAATACAGACCTAAAGCAGGAAC-AAAGAAGAACGAAAATGCTGAGAAGGCTTGT  59
            ||||| ||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct  815  CTGCACAATACGGACCTAAAGCAAGAACGAAA-AAGAACGAAAATGCTGAGAAGGCTTGT  873

Query  60   TTTGAAGTCATATGGAAGCCTTAAGCCGGATAGATTGG  97
            || ||||||||||||||||||||| |||||||||||||
Sbjct  874  TT-GAAGTCATATGGAAGCCTTAAACCGGATAGATTGG  910


> AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like 
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062

 Score =  124 bits (67),  Expect = 3e-28
 Identities = 80/86 (93%), Gaps = 2/86 (2%)
 Strand=Plus/Plus

Query  13   GACCTAAAGCAGGAAC-AAAGAAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATA  71
            |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct  259  GACCTAAAGCAGGAACGAAA-AAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATA  317

Query  72   TGGAAGCCTTAAGCCGGATAGATTGG  97
            ||||||||| || ||||  |||||||
Sbjct  318  TGGAAGCCTAAATCCGGGCAGATTGG  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5