BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891709

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25580.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   137    4e-32


> AT5G25580.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178 
Blast hits to 178 proteins in 75 species: Archae - 0; Bacteria 
- 4; Metazoa - 51; Fungi - 33; Plants - 60; Viruses - 1; 
Other Eukaryotes - 29 (source: NCBI BLink). | chr5:8903505-8906311 
FORWARD LENGTH=1466
Length=1466

 Score =  137 bits (74),  Expect = 4e-32
 Identities = 85/90 (94%), Gaps = 2/90 (2%)
 Strand=Plus/Plus

Query  58   GAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAATTGGTGG-GATGATTGAGACAGA  116
            ||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||
Sbjct  799  GAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAACTGG-GCAGATGATTGAGACAGA  857

Query  117  AGCTATACCAGTTGTTGAGAAATATCATAA  146
            ||||||||| ||||||||||||||||||||
Sbjct  858  AGCTATACCCGTTGTTGAGAAATATCATAA  887



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5