BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891728
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39890.1 | Symbols: | Protein of unknown function (DUF1637)... 1158 0.0
> AT5G39890.1 | Symbols: | Protein of unknown function (DUF1637)
| chr5:15974393-15976270 FORWARD LENGTH=1238
Length=1238
Score = 1158 bits (627), Expect = 0.0
Identities = 783/855 (92%), Gaps = 24/855 (3%)
Strand=Plus/Plus
Query 1 ATGCGAACTGGTACAGTTGTGTCTGGACGAGTAAGTAAAGATCTCTCAAAAACGAATCCA 60
||| |||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 151 ATGGGAACTGATACAGTTATGTCTGGACGAGTAAGGAAAGATCTATCAAAAACGAATCCA 210
Query 61 AATGGGAATATTCCGTTGGTGACGAAATCTATCGCTTCTGAGAATCGTTCTAGTTCACGT 120
|||||||||||||| | | | ||| || | |||| | | | | | | | ||
Sbjct 211 AATGGGAATATTCC-T-G---A-GAA-TC----G-TTCT-A-A-T--T-C-A---C--GT 246
Query 121 AAGAAGATCCAACGACGGAGCCAGAAAACCCTAATCTGTCCGGTTCAGAAACTGTTCGAT 180
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 247 AAGAAGATCCAACGACGGAGTAAGAAAACCCTAATCTGTCCGGTTCAAAAACTATTCGAT 306
Query 181 ACTTGTAAGAAAGTTTTCGCTAATGGCAAATCTGGAACCGTCCCTTCTGAAGAAAACATT 240
||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 307 ACTTGTAAGAAAGTTTTCGCTGATGGCAAATCTGGTACCGTCCCTTCTCAAGAAAACATT 366
Query 241 GAGATGCTTCGAGCCGTTTTGGACGTAATCACGCCTGAGGATGTTGGTGTGAGTCCTAAG 300
||||||||||||||||||||||| | ||||| ||||||||||||||| || | |||||||
Sbjct 367 GAGATGCTTCGAGCCGTTTTGGATGAAATCAAGCCTGAGGATGTTGGCGTAAATCCTAAG 426
Query 301 ATGCCGTTTTTTCGATCTAAAGAGACCGGACGTTCTCCGCTAGTGACGTATCTTCACATC 360
||| ||| ||||||||||| || ||||||||| |||||| ||||||||||||||||||||
Sbjct 427 ATGTCGTATTTTCGATCTACAGTGACCGGACGATCTCCGTTAGTGACGTATCTTCACATC 486
Query 361 TATGCATGTCATAGATTCTCGATTTGCATTTTCTGTTTACCACCATCTGGTGTAATCCCT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 487 TATGCATGTCATAGATTCTCGATTTGCATTTTCTGTTTACCTCCATCTGGTGTTATCCCT 546
Query 421 CTTCATAATCACCCGGAGATGACTGTGTTTAGTAAGCTCTTGTTTGGTACAATGCATATC 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CTTCACAATCACCCGGAGATGACTGTGTTTAGTAAGCTCTTGTTTGGTACAATGCATATC 606
Query 481 AAATCCTATGATTGGGTTGCAGATTCTCCCCAGCCGAGTTCAGATACTCGTTTGGCGAAA 540
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 607 AAATCCTATGATTGGGTCCCTGATTCTCCCCAGCCGAGTTCAGATACTCGTTTGGCGAAA 666
Query 541 GTGAAAGTAGATTCGGATTTTACGGCACCTTGTGATACTTCTATACTCTATCCGGCTGAT 600
||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||
Sbjct 667 GTGAAAGTAGATTCGGACTTTACCGCACCTTGTGATACTTCTATACTGTACCCGGCTGAT 726
Query 601 GGAGGGAATATGCATTGCTTCACCGCGAAAACAGCTTGTGCGGTTCTTGATGTTCTTGGT 660
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 727 GGAGGGAATATGCATTGCTTCACCGCGAAAACGGCTTGCGCGGTTCTTGATGTTATTGGT 786
Query 661 CCTCCATACTCTGATCCCGCAGGACGTCATTGTACTTACTATTTCGATTATCCGTTCTCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 CCTCCATACTCTGATCCCGCAGGACGTCATTGTACTTACTATTTCGATTATCCGTTCTCT 846
Query 721 AGTTTTTCAGTTGATGGAGTCGCGGTTGCGGAAGAAGAGAAGGAAGGCTATGCATGGTTG 780
||||| || || |||||||||| |||||| || || ||||||||||||||||||||||||
Sbjct 847 AGTTTCTCGGTCGATGGAGTCGTGGTTGCCGAGGAGGAGAAGGAAGGCTATGCATGGTTG 906
Query 781 AAGGAGAGGGAAGAGGAGCCAGAGGATTTGACGGTTAGTGCAATGATGTATAGTGGACCA 840
||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 907 AAGGAGAGGGAAGAGAAGCCAGAGGATTTAACGGTTACTGCATTGATGTATAGTGGACCA 966
Query 841 ACCATCAAAGAATGA 855
|||||||||||||||
Sbjct 967 ACCATCAAAGAATGA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5