BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891733
Length=2451
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39370.1 | Symbols: | Curculin-like (mannose-binding) lecti... 553 3e-156
AT5G39861.1 | Symbols: | pseudogene, similar to receptor kinas... 455 1e-126
AT5G39863.1 | Symbols: | pseudogene, similar to receptor-like ... 279 6e-74
AT4G21380.1 | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:113... 274 3e-72
AT1G65800.1 | Symbols: ARK2, RK2 | receptor kinase 2 | chr1:244... 222 1e-56
> AT5G39370.1 | Symbols: | Curculin-like (mannose-binding) lectin
family protein | chr5:15757717-15758109 FORWARD LENGTH=393
Length=393
Score = 553 bits (299), Expect = 3e-156
Identities = 354/381 (93%), Gaps = 2/381 (1%)
Strand=Plus/Plus
Query 190 ATGTGGTACCGAAAGCTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACAATCCACTC 249
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1 ATGTGGTACCGAAAGTTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACACTCCAGTC 60
Query 250 TCCAAGCCTATCGGAACACTCAAAATCTTCAATAATAACCTCCACCTCTTTGATCATACT 309
|||||||| ||||||||||| |||||||| ||||| |||||||||||| |||||||||||
Sbjct 61 TCCAAGCCCATCGGAACACTAAAAATCTTGAATAACAACCTCCACCTCATTGATCATACT 120
Query 310 AGTAACTCTGTTTGGTCAACCCAAGTGACTGGCCAAAGTCTGAAGTCGGACCTGACCGCC 369
|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 121 AGTAACTCCGTTTGGTCAACCCAAGTGACTAGCCAAAGTCTGAAGTCGGAACTGACCGCC 180
Query 370 GAGCTTCTTGACAACGGCAACTTGGTATTGCGATACTCCAATGAA-AACGAGACAAGTGG 428
|||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||
Sbjct 181 GAGCTTCTTGACAACGGCAATTTGGTATTGCGGTACTCCAAC-AACAACGAGACAAGTGG 239
Query 429 ATTTCTATGGCAAAGTTTCGACTTTCCGACGGATACATTACTCCCTAATATGAAAGTGGG 488
|||| |||||||||| |||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 240 ATTTTTATGGCAAAGCTTCGGCTTTCCGACGGATACATTACTCCATGATATGAAAGTGGG 299
Query 489 TTGGGATAAGAATTCTGGTCTAAATAGGATATTACAATCATGGAAAGGCATTAATGATCC 548
|||||||||||| || |||||||||||||||||||||||||||||| || ||||||||
Sbjct 300 TTGGGATAAGAAGTCGGGTCTAAATAGGATATTACAATCATGGAAAAACAGGAATGATCC 359
Query 549 TTCAACTGGCGATTACACTTA 569
|||||||||||||||||||||
Sbjct 360 TTCAACTGGCGATTACACTTA 380
> AT5G39861.1 | Symbols: | pseudogene, similar to receptor kinase
5, blastp match of 69% identity and 5.6e-67 P-value to GP|16040952|dbj|BAB69683.1||AB041621
receptor kinase 5 {Brassica
rapa} | chr5:15960354-15961397 REVERSE LENGTH=1044
Length=1044
Score = 455 bits (246), Expect = 1e-126
Identities = 296/320 (93%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 2124 ATATATATGGAGGAATTGGAAGGAAGGAAAAGGGCTCGACAGCATAGATCAAGTTATCCT 2183
||| ||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||
Sbjct 722 ATAGATATGGAGGAATTGGAAGGAAGGTAAAGGGCTCGAAATCATAGATCAAATTATCCT 781
Query 2184 TGATTCATCAACATTTCAACCACACCAAGTTAAAAGATGCATACAGATTGGTCTCTTGTG 2243
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 782 TGATTCATCAACATTTCAACAACACCAAGTTAAAAGATACATACAGATTGGTCTCTTGTG 841
Query 2244 TGTTCAAGAACGTGCAGAGGATAGACCCACGATGTTATTAGTGTCTGTCATGTTCGCAAG 2303
|||||||||| |||| |||||||| ||||||||| ||| | | |||||||||||||||||
Sbjct 842 TGTTCAAGAATGTGCTGAGGATAGGCCCACGATGCTATCAATCTCTGTCATGTTCGCAAG 901
Query 2304 CGACACAATGGAGATCGATCCGCCTGGACCGCCTGGTTATTTAGTCCGTAGAAGTCATCT 2363
||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 902 CGACACAATAGAGATCGCTCCGCCTGGACCGCCTGGTTATTTAGTCCGTAAAAGTCAACT 961
Query 2364 TGAGACTGGTTCCTC---GTCACGAAAGAAGCTAAACGAAGAATCTTGGACTGTGGCCGA 2420
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 962 TGAGACTGGTTCCTCCTCGTCACGAAAGAAGCGAAACGAAGAATCTTGGACTGTGGCAGA 1021
Query 2421 AGTAACCTACTCGGCCATTG 2440
||||||||| ||||||||||
Sbjct 1022 AGTAACCTATTCGGCCATTG 1041
Score = 368 bits (199), Expect = 1e-100
Identities = 225/238 (95%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 1735 GACAAAAGCCAAAGCTCTAAGCTAACCTGGGAGAAGAGGGTCCAAATTATTAATGGAATC 1794
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 149 GACAAAAACCAAAGCTCTAAGCTAAACTGGGAGAAGAGGGTCCAAATAATTAATGGAATC 208
Query 1795 TCTCGGGGACTTTTATATCTTCACCAAGATTCGCGGCGTCCGATGGTCCACAGGGACCTA 1854
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 209 TCTCGGGGACTTTTATATCTTCACCAAGATTCGCGGCGTCCTATTGTCCATAGAGACCTA 268
Query 1855 AAACCGAGCAACATATTACTTGATCAAGATATGATTCCGAAGATATCAGATTTTGGGATG 1914
|||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 269 AAACCGAGCAACGTCTTACTTGACCAAGATATGGTTCCGAAGATATCAGATTTTGGGATG 328
Query 1915 AGTAAACTCTTCGACAAGCGTACGACAGCAGCTAACACAACAAAGATCGTTGGAACTT 1972
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 329 AGTAAACTCTTCGACAAGCGTGCGACAGCAGCTAACACAACAAAGATCGTCGGAACTT 386
Score = 219 bits (118), Expect = 1e-55
Identities = 142/154 (92%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 1974 CGGTTATATGTCTCCCGAATACGCGGAGGACGGAACTTATTCAACAAAGTCAGATGTTTT 2033
||| ||||||||||| |||||||||||||| || | ||||||||||||||||||||||||
Sbjct 477 CGGCTATATGTCTCCGGAATACGCGGAGGAAGGGATTTATTCAACAAAGTCAGATGTTTT 536
Query 2034 CAGCTTTGGAGTCGTGCTTCTTGAGATTATATTTGGAGTAAAAAACAGAGACTTTTATAT 2093
|||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 537 CAGCTTCGGAGTCTTGCTTCTTGAGATTATATTTGGGGTTAAAAACAGAGACTTTTATAG 596
Query 2094 ATACTCGGAGAACGAAGAAAGTCTTCTTACATAT 2127
||||||||||||||| ||||||||| ||||||||
Sbjct 597 ATACTCGGAGAACGACGAAAGTCTTATTACATAT 630
Score = 100 bits (54), Expect = 5e-20
Identities = 59/61 (97%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 1675 GGTGAGATGATTTTAATATATGAGTACTTGGAAAACTCTAGCCTCGATAAGTTTATATTC 1734
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 8 GGTGAGATGATTTTAATATATGAGTACTTGGAAAACTC-AGCCTCGATAAGTATATATTC 66
Query 1735 G 1735
|
Sbjct 67 G 67
> AT5G39863.1 | Symbols: | pseudogene, similar to receptor-like
kinase, blastp match of 65% identity and 4.1e-20 P-value to
GP|1783312|emb|CAA67145.1||X98520 receptor-like kinase {Brassica
oleracea} | chr5:15964721-15965170 REVERSE LENGTH=450
Length=450
Score = 279 bits (151), Expect = 6e-74
Identities = 161/166 (97%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 1523 AGGGAAGGTTACTTGGCGGACAAGAAATCGCTGTGAAAAGATTGTTGAAGATGTCAACTC 1582
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 197 AGGGAAGGTTACTTGGCGGACAAGAAATCGTTGTGAAAAGACTGTTGAAGATGTCAACTC 256
Query 1583 AAGGTATCGATGAATTTAAGAATGAGTTGAGTCTGAACGCCAGTGTCCAACACGTCAACC 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 257 AAGGTATCGATGAATTTAAGAATGAGTTGAGTCTGAACGCCAGTGTCCAACACGTAAACC 316
Query 1643 TCGTCCAGCTCCTGGGATACTGTTTTGAGGGTGGTGAGATGATTTT 1688
||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 317 TCGTCCAACTCCTGGGATACTGTTTTGAGGGCGGTGAGATGATTTT 362
Score = 169 bits (91), Expect = 1e-40
Identities = 103/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1417 GGAGAATTACATTGTGAGGAAATGACACTTGAAACAGTTGTAGTGGCGACCCAAGGTTTT 1476
||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 13 GGAGAATTACATTGTGAGGAAATGACACTTGAAACTGTTATAGTGGCCACCCAAGGTTTT 72
Query 1477 TCGGATTCAAATAAAATCGGTCAAGGTGGTTTTGGTATTGTTTACAAGG 1525
|| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 73 TCAGATTCAAATAAAATCGGTCAAGGTGGTTTTGGAATTGTTTATAAGG 121
> AT4G21380.1 | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11388925-11393226
REVERSE LENGTH=2983
Length=2983
Score = 274 bits (148), Expect = 3e-72
Identities = 600/811 (74%), Gaps = 60/811 (7%)
Strand=Plus/Plus
Query 1498 CAAGGTGGTTTTGGTATTGTTTACAAGGGAAGGTTACTTGGCGGACAAGAAATCGCTGTG 1557
||||||||||||||||| ||||| ||||||| |||||||| || |||||||| || |||
Sbjct 1736 CAAGGTGGTTTTGGTATAGTTTATAAGGGAAAGTTACTTGATGGTCAAGAAATGGCAGTG 1795
Query 1558 AAAAGATTGTTGAAGATGTCAACTCAAGGTATC-GATGAATTTAAGAATGA-GTTGAGTC 1615
|| ||| | | |||| ||| ||| || | | ||||| || |||||||| || |||
Sbjct 1796 AAGAGACTATCAAAGACATCAGTTCAGGGGA-CTGATGAGTTCAAGAATGAGGTAAAGT- 1853
Query 1616 TGAACGCCAGTG-TCCAACACGTCAACCTCGTCCA-GCTCCTGGGATACTGTTTTGA-GG 1672
||| || || | | || ||| | ||||| || | ||| || | || || | || |
Sbjct 1854 TGATTGCAAG-GCTTCAGCACATAAACCTTGT-TAGGCTTCTTGCATGTTGCGTCGATGC 1911
Query 1673 GTGGTGAGATGATTTTAATATATGAGTACTTGGAAAACTCT-AGCCTCGATAAGT-TTAT 1730
| ||||||| ||| || || || |||||||||||||| ||| |||||||| | | |
Sbjct 1912 G-GGTGAGAAGATGTTGATTTACGAGTACTTGGAAAA-TCTAAGCCTCGA-CTCTCATCT 1968
Query 1731 ATTCGACAAAAGCC-AAAGCTCTAAGCTAACCTGGGAGAA-GAGGGTCCAAATTATTAAT 1788
||| |||||| || ||| ||||||||||| ||| | || ||| | | || || |||
Sbjct 1969 ATTTGACAAATCCCGAAA-CTCTAAGCTAAATTGGCA-AATGAGATTTGATATCATCAAT 2026
Query 1789 GGAATCT-CTCGGGGACTTTTATATCTTCACCAAGATTCGCGGCGTCCG-ATGGTCCACA 1846
|| || | |||| |||||| ||||||||||||||||||| ||| | | || |||| |
Sbjct 2027 GGTAT-TGCTCGAGGACTTCTATATCTTCACCAAGATTCACGG-TTTAGAATTATCCATA 2084
Query 1847 GGGACCTAAAACCGAGCAACATATTACTTGATCAAGATATGATTCCGAAGATATCAGATT 1906
| ||| | ||| | || ||||| || |||||| || |||||| ||| ||||| || ||||
Sbjct 2085 GAGACTTGAAAGCAAGTAACATCTTGCTTGATAAATATATGACTCCAAAGATCTCGGATT 2144
Query 1907 TTGGGATGAG-TA--AACTCTTCGACAAGCG-T-ACGACAGCAGCTAACACAACAAAGAT 1961
| || ||| | || | || || ||| | | | | ||||| |||||| || | ||| |
Sbjct 2145 TCGGAATG-GCTAGGATCT-TTGGAC--GGGATGA-GACAGAAGCTAATACGAGGAAGGT 2199
Query 1962 CGTTGGAACTTTCGGTTATATGTCTCCCGAATACGCGGA-GGAC-GGA-ACTTATTCAAC 2018
|||||||| | ||||||||||||||| ||||| || | |||| ||| | || || |
Sbjct 2200 GGTTGGAACCTACGGTTATATGTCTCCTGAATATGC-AATGGACGGGATA-TT-CTCGAT 2256
Query 2019 AAAGTCAGATGTTTTCAGCTTTGGAGTCGTGCTTCTTGAGATTATATTTGGAGTAA-A-A 2076
||||||||||||||||| ||||| ||| ||||||||||||||||| | || || |
Sbjct 2257 GAAGTCAGATGTTTTCAGTTTTGGGGTCTTGCTTCTTGAGATTATA--AGTAGCAAGAGG 2314
Query 2077 AACAGA-GACTTTTATATATACTCGGAGAACGA-AGAAAGTCTTCTTACATATATATGGA 2134
|||| | || || || | || ||||| || || ||||| | | | ||||
Sbjct 2315 AACAAAGGA-TTCTACA-AT--TCGGACCGTGACCTTAA-CCTTCTCGGTTGTGTGTGGA 2369
Query 2135 GGAATTGGAAGGAAGGAAAAGGGCTCGACAGCATAGAT-CAAGTTATC-CTTGA---TTC 2189
|||||||||| |||||||||||||| || | ||||||| ||| | ||| | || |||
Sbjct 2370 GGAATTGGAAAGAAGGAAAAGGGCTAGAGATCATAGATCCAA-TCATCAC-AGATTCTTC 2427
Query 2190 ATCAACATTTCA-ACCACACCAAGT-TAAAAGATGCATACAGATTGGTCTCTTGTGTGTT 2247
||||||| |||| | ||| || | | |||||||||||| ||||| ||||||||||||
Sbjct 2428 ATCAACA-TTCAGGCAACATGAAATCT-TAAGATGCATACAAATTGGCCTCTTGTGTGTT 2485
Query 2248 CAAGAACGTGCAGAGGATAGACCCACGATGT 2278
||||||||||||||||| ||||| || ||||
Sbjct 2486 CAAGAACGTGCAGAGGACAGACCAACTATGT 2516
> AT1G65800.1 | Symbols: ARK2, RK2 | receptor kinase 2 | chr1:24473121-24476715
FORWARD LENGTH=2781
Length=2781
Score = 222 bits (120), Expect = 1e-56
Identities = 591/809 (73%), Gaps = 69/809 (9%)
Strand=Plus/Plus
Query 1498 CAAGGTGGTTTTGGTATTGTTTACAAGGGAAGGTTACTTGGCGGACAAGAAATCGCTGTG 1557
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||
Sbjct 1636 CAAGGTGGTTTTGGTATTGTTTACAAGGGAATGTTACTTGATGGAAAAGAAATCGCGGT- 1694
Query 1558 AAA-AGATTGTTGAAGATGTCAACTCAAGGTATCGATGAATTTAAGAATGAG-TT-GAGT 1614
||| ||| | | ||| ||||| | ||||| | |||||| || | ||| ||| || || |
Sbjct 1695 AAAGAGACTATCGAAAATGTCTTCACAAGGGACCGATGAGTTCATGAACGAGGTTAGA-T 1753
Query 1615 CTGAAC-GCCA-G-TGTCCAACACGTCAACCTCGTCCAGCTCCTGGGATACTGTTTTGAG 1671
| || || | | | || | ||| | ||||| |||| ||| || || | || | ||
Sbjct 1754 -T-AATTGCAAAGCT-TC-AGCACATAAACCTTGTCCGGCTTCTAGGTTGTTGCGTCGAT 1809
Query 1672 G-GTGGTGAGATGATTTTAATATATGAGTACTTGGAAAACTCTA-GCCTCGA-TAAGTTT 1728
| ||||||| ||| || || |||||||||||||| || |||| |||| || | | |
Sbjct 1810 AAG-GGTGAGAAGATGTTGATCTATGAGTACTTGGAGAA-TCTAAGCCTTGACTC-GCAT 1866
Query 1729 ATATTCGACAAAAGC-CAAAGCTCTAAGCT-AACCTGGGAGAAGAGGGTCCAAATTATTA 1786
| || ||| ||| | | ||||||||| || || ||| | ||||| | | ||||| |
Sbjct 1867 CTCTTTGACCAAA-CACGAAGCTCTAA-CTTAAATTGGCAAAAGAGATTTGATATTATCA 1924
Query 1787 ATGGAATCT-CTCGGGGACTTTTATATCTTCACCAAGATTCGCGGCGTCCGATGGTCCAC 1845
|||| || | || | |||||| ||||||||||||||||||| ||| || ||| ||||
Sbjct 1925 ATGGTAT-TGCTAGAGGACTTCTATATCTTCACCAAGATTCACGGTGTAGGATTATCCAT 1983
Query 1846 AGGGACCTAAAACCGAGCAACATATTACTTGATCAAGATATGATTCCGAAGATATCAGAT 1905
|| ||| | ||| | || ||| |||| |||||| || |||||| ||| ||||| || |||
Sbjct 1984 AGAGACTTGAAAGCAAGTAACGTATTGCTTGATAAAAATATGACTCCAAAGATCTCCGAT 2043
Query 1906 TTTGGGATGAGTAA--ACTCTTCG-ACAAGCGTACGACAGCAG-CTAACACAACAAAGAT 1961
||||||||| | | | |||| | || | | | ||||| || |||| |||| | | |
Sbjct 2044 TTTGGGATG-GCGAGGA-TCTTTGGACGGGAGGA-GACAG-AGGCTAATACAAGGAGGGT 2099
Query 1962 CGTTGGAACTTTCGGTTATATGTCTCCCGAATACGCGGA-GGACGGAACTTATTCAAC-A 2019
|| ||||||| ||| || |||||||| ||||| || | |||||| | | |||| | |
Sbjct 2100 GGTCGGAACTTACGGCTACATGTCTCCAGAATATGCA-ATGGACGGGA-T-ATTCT-CGA 2155
Query 2020 --AAGTCAGATGTTTTCAGCTTTGGAGTCGTGCTTCTTGAGATTATATTTGGAGTAAA-A 2076
||||| ||||||||||||||||| ||| ||||||| ||||||||| |||| ||| |
Sbjct 2156 TGAAGTCGGATGTTTTCAGCTTTGGGGTCTTGCTTCTAGAGATTATAAGTGGAA-AAAGA 2214
Query 2077 AACAGAG-ACTTTTATA--T-ATACTCGGAGAACGAAGAAAGTCTTCTTACATATATATG 2132
|||| || | || || | | | || || || | | | ||| ||| | | | ||
Sbjct 2215 AACAAAGGA-TTCTACAACTCAAAC-CGT-GATCTTA-A---TCTCCTTGGTTTTGTGTG 2267
Query 2133 GAGGAATTGGAAGGAAGGAAAAGGGCTCGACA--GCATA---GATCAAGTT--ATCCTT- 2184
|||| |||||||||||||||||| ||| || | | | | |||||| | || |||
Sbjct 2268 GAGGCATTGGAAGGAAGGAAAAGAGCTAGAGATTGTAGATCCGATCAACATCGATGCTTT 2327
Query 2185 GATTCATCA-ACATTTCA-ACCACACCAAGT-TAAAAGATGCATACAGATTGGTCTCTTG 2241
| | ||||| | ||| | || ||| || | | || |||| ||||| ||||||||||||
Sbjct 2328 G-T-CATCAGA-ATTCCCGAC-ACATGAAATCTTAA-GATGTATACAAATTGGTCTCTTG 2382
Query 2242 TGTGTTCAAGAACGTGCAGAGGATAGACC 2270
|||||||||||||| || || || |||||
Sbjct 2383 TGTGTTCAAGAACGAGCCGAAGACAGACC 2411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121604669832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5