BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891742

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06160.1 | Symbols: ATO | splicing factor-related | chr5:186...   222    2e-57


> AT5G06160.1 | Symbols: ATO | splicing factor-related | chr5:1862369-1866433 
REVERSE LENGTH=1904
Length=1904

 Score =  222 bits (120),  Expect = 2e-57
 Identities = 152/165 (92%), Gaps = 12/165 (7%)
 Strand=Plus/Plus

Query  153  GCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGACTACGAAGCACGCCTGAAGGAGGA  212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  GCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGACTACGAAGCACGCCTGAAGGAGGA  503

Query  213  ACCAGTTATTGCGTTCAGTGGAGAGGAAGGCAATGGTCGGTACTTGGACTTGCATGA---  269
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct  504  ACCAATTATTGCGTTCAGTGGAGAGGAAGGCAATGGTCGGTACTTGGACTTGCATGATAT  563

Query  270  GTA---C-A-T-CA--A-CTCTAAATTTGGGGAAAGGGTTGAATA  305
            |||   | | | ||  | |||||||||||||||||||||||||||
Sbjct  564  GTATAACCAGTACATCAACTCTAAATTTGGGGAAAGGGTTGAATA  608


 Score =  193 bits (104),  Expect = 2e-48
 Identities = 117/123 (95%), Gaps = 1/123 (1%)
 Strand=Plus/Plus

Query  302  AATACCGCGATAAACTGAAGTTATCGAGGCAATACAGGAAGTATATGGAAGCTCTGCTAG  361
            ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct  645  AATACCGCG-TAAACTGAAGTTATCGAGGCAATACATGAAGTATATGGAAGCTCTACTTG  703

Query  362  AGTACTTGGTCTACTTTTTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTT  421
            ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  704  AGTACCTGGTCTACTTCTTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTT  763

Query  422  CTA  424
            |||
Sbjct  764  CTA  766


 Score = 62.1 bits (33),  Expect = 5e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  424  AGCCGTTGCAAGATCTTGACCGGATACTTTCTA  456
            |||||||||||||||||||||||||||||||||
Sbjct  734  AGCCGTTGCAAGATCTTGACCGGATACTTTCTA  766



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5