BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891744
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07950.1 | Symbols: MED22B | Surfeit locus protein 5 subunit... 335 1e-91
> AT1G07950.1 | Symbols: MED22B | Surfeit locus protein 5 subunit
22 of Mediator complex | chr1:2465770-2467022 REVERSE LENGTH=796
Length=796
Score = 335 bits (181), Expect = 1e-91
Identities = 214/230 (93%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 1 GTGAGTGATTCGCCGGTGAAGAACTCGCAGGAAG-CTTACATGATGGAGATGCGAGCTTC 59
||||||||| ||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 206 GTGAGTGATCCGCCGGTGAAGAACTCGCAGG-AGACATACATGATGGAGATGCGAGCTTC 264
Query 60 TAGACTGGTTCAAGCAGCAGATTCTCTTTTGAAACTCGTATCGGAACTGAAGCAAATAGC 119
|||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 265 TAGAATGGTTCAAGCAGCTGATTCTCTTTTGAAACTCGTATCAGAACTTAAGCAAACAGC 324
Query 120 AATTTTTTCAGGATTTGCATCGCTTAACGATTATGTAGAACAAAGAATAGAAGAGTTTGA 179
|| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||
Sbjct 325 GATATTTTCAGGATTTGCATCACTAAACGATCATGTAGAACAAAGAATAGAAGAGTTTGA 384
Query 180 TCAAGAGGCCGAGAAGACAAATCGATTGTTGGCTAGAATAGCTGTTGATG 229
||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 385 TCAAGAGGCCGAGAAGACAAATCGATTGTTGGCTAGAATTGCTGATGATG 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12667472748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5