BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891747
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39820.1 | Symbols: anac094, NAC094 | NAC domain containing ... 1253 0.0
> AT5G39820.1 | Symbols: anac094, NAC094 | NAC domain containing
protein 94 | chr5:15939300-15940491 REVERSE LENGTH=1014
Length=1014
Score = 1253 bits (678), Expect = 0.0
Identities = 799/857 (93%), Gaps = 10/857 (1%)
Strand=Plus/Plus
Query 1 ATGGATGATGAAGAGAGTAACATCGTAGAAAGATATGACGACGTCGTTTTGCCAGGGTTT 60
|||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 13 ATGGATGATGAAGAGAGTAACAACGTTGAAAGATATGACGACGTCGTATTGCCAGGGTTT 72
Query 61 AGGTTTCATCCCACTGATGAAGAACTCGTAAGTTTCTACTTGAAAAGGAAGGTTTTACAC 120
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 73 AGGTTCCATCCCACTGATGAAGAACTCGTAAGTTTCTACTTGAAACGGAAGGTTTTACAC 132
Query 121 AAATCTCTTCCCTTTGAGCTCATCAAGAAAGTCGACATTTACAAATACGATCCATGGGAC 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AAATCTCTTCCCTTTGATCTCATCAAGAAAGTCGACATTTACAAATACGATCCATGGGAC 192
Query 181 CTCCCAAAGCTTGCGGCGATGGGGGAGAAAGAGTGGTACTTTTACTGTCCAAGAGACAGG 240
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 193 CTCCCAAAGCTTGCAGCGATGGGGGAAAAAGAGTGGTACTTTTATTGTCCTAGAGACAGG 252
Query 241 AAATACCGGAACAGCACGAGGCCTAACCGAGTAACCGGAGGTGGATTCTGGAAAGCTACC 300
|||||||| |||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct 253 AAATACCGCAACAGCACAAGACCTAACCGAGTAACTGGAGGTGGCTTCTGGAAAGCAACC 312
Query 301 GGGACTGACCGGCCTATATACTCATTGGACTCTACTCGATGCATCGGTTTGAAGAAGTCG 360
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 313 GGAACAGACCGGCCTATATACTCATTGGACTCCACTCGATGCATCGGTTTGAAGAAATCA 372
Query 361 CTAGTTTTCTACCGTGGTCGAGCTGCTAAAGGAGTCAAAACCGATTGGATGATGCACGAA 420
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 373 CTTGTGTTCTACCGTGGTCGAGCTGCTAAAGGAGTCAAAACCGATTGGATGATGCATGAA 432
Query 421 TTTCGGCTCCCTTCTCTCTCTGACTCTCATCACTCAACATATCCCAATTACAATAACAAG 480
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 433 TTTCGTCTCCCTTCTCTCTCTGACTCTCATCACTCATCATATCCCAATTACAATAACAAG 492
Query 481 AAGCAACACCTTAACAATAACAACAACAGCAAAGAGCTTCCTTCAAACGATGCTTGGGCG 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 493 AAGCAACACCTTAACAATAACAACAACAGCAAGGAGCTTCCTTCAAACGATGCTTGGGCG 552
Query 541 ATATGTAGAATATTCAAGAAGACGAATGCGGTATCGTCACAAAGATCAATCCCACAATCT 600
|||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 553 ATATGTAGAATATTTAAGAAGACAAATGCAGTATCCTCACAAAGATCAATCCCACAATCT 612
Query 601 TGGGTTTATCCAACGATTCCTGACACCAACCAATACAACTCACACTCACACAACAACACC 660
||||||||||||||||||||||||| | | ||| |||| | |||||||||||||||
Sbjct 613 TGGGTTTATCCAACGATTCCTGACA--A-C-AAT-CAAC--AG--TCACACAACAACACC 663
Query 661 GCGACTCTCTTAGCTTCATCAGACGGTCTCAGCCACATATCAACAAGACAAAACCTTATC 720
|| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 664 GCAACTCTCTTAGCTTCATCAGACGTTCTCAGCCACATATCAACAAGACAAAACTTTATT 723
Query 721 CCTTCTCCGGTCAACGAACCCACAAGCTTCACAGAATCAGCTGCTGCTTATTTCGCGTCT 780
|||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 724 CCTTCTCCAGTCAACGAACCCGCAAGCTTCACAGAATCAGCTGCTTCTTACTTCGCGTCT 783
Query 781 CAAATGCTCGGAGTCCCGTACAACACAACTAGAAACAGCGGAACAGGGGATGCTCTGTTT 840
|| |||||||||||| ||||||| ||| | ||||||| ||||||||||||||||||||||
Sbjct 784 CAGATGCTCGGAGTCACGTACAATACAGCCAGAAACAACGGAACAGGGGATGCTCTGTTT 843
Query 841 TTGAGCAACAATGAGAA 857
|||| ||||||| |||
Sbjct 844 CTGAGAAACAATG-GAA 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5