BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891750
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39790.1 | Symbols: | 5'-AMP-activated protein kinase-relat... 1208 0.0
> AT5G39790.1 | Symbols: | 5'-AMP-activated protein kinase-related
| chr5:15932714-15935261 REVERSE LENGTH=1132
Length=1132
Score = 1208 bits (654), Expect = 0.0
Identities = 778/836 (93%), Gaps = 16/836 (2%)
Strand=Plus/Plus
Query 1 ATGGGGTGTGTACCCAGAATTGGATTTGGTTGTTCAAGTGAAAACCTTACTCTTTCATGG 60
||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 141 ATGGGATGTGTACCCAGAATTGAATTTGGTTGTTCAAGCCAAAGCCTTACTCTTTCATGG 200
Query 61 AACTTAAGAGCATGGAATTTGGGAAGACTG-ACTACGATTTCGCATTTTCGGAAACTTCC 119
||||||||||||||||||||| | ||| || || || || || ||||| | |||||||||
Sbjct 201 AACTTAAGAGCATGGAATTTGTGTAGATTGAAC-ACAATCTCCCATTTCCAGAAACTTCC 259
Query 120 TTATCCTTTGGTAGCTTCTACTCGAAACCATTACAAGAACAGTTTGCTTTTGAAGAGATT 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 260 TTATCCTTTGGTAGCTTCTACTCGAAAACATTACAAGAACAGTTTGCTTTTGAAGAGATT 319
Query 180 TTTAGTTGGTGTTGGCACAGAGGAATCATCATTGTCACAAGATTCACTAGATGAATCTCT 239
|||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||
Sbjct 320 TTTAGTTGGTGTTGGCACTGAGGAATCATCACTGTCAGAAGATTTACTAGATGAATCTCT 379
Query 240 TTCTCGACCTCTCACTAGTGATGAGTTGAAGTCACTGCTCATCGATACAGAGAGATCGAA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 380 TTCTCGACCTCTCACTAGTGATGAGTTGAAGTCACTGCTCATTGATACAGAGAGATC-AA 438
Query 300 A-CTTGTTAAAAAATTGAGTGAAGCTAATCAACAGAATCGGTTCCTCAAGCGCCAGCTTA 358
| ||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 439 AGCTTGTTAAAAAATTGAGTGAAGCTAATCAACAGAATCGGTTCCTCAA--G-C-G--T- 491
Query 359 AAACACAGGAAGATGAGATAACTAACATCAAAAGTGAGCTTGCACTTATGGAGCTCGAAG 418
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 492 -----CAGGAACATGAGATAACTAACATCAAAACTGAGCTTGCACTTATGGAGCTCGAAG 546
Query 419 TTCAGGCTCTGGTCAAACTGGCGGAAGAAATAGCAAACCTTGGTATTCCAGAAGGTTCTA 478
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 547 TTCAGGCTCTGGTGAAACTGGCGGAAGAAATAGCAAACCTTGGTATCCCACAAGGTTCTA 606
Query 479 GAAAAATCAGCGGAAAGTACATTCAGTCACACCTTCTCTCTCGTTTAGACGCTGTTCaaa 538
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 607 GAAAAATCAGTGGAAAGTACATTCAATCGCACCTTCTCTCTCGTTTAGACGCTGTTCAAA 666
Query 539 aaaaGTTGAAGGAACAAATAAAAGATGTTGAGGCTGCACAGTCGAAGGAGGTTCATGTGT 598
||||| |||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 667 AAAAGATGAAAGAACAAATAAAAGGTGTCGAGGCTGCACAGTCAAAGGAGGTTCATGTGT 726
Query 599 TCTGGATTGGCATGGCAGAGAGTGTGCAAGTAATGGGATCATTCGATGGATGGAGCCAAC 658
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 727 TCTGGATTGGCATGGCAGAGAGTGTACAAGTAATGGGATCGTTCGATGGATGGAGCCAAC 786
Query 659 GTGAGGATCTATCCCCTGAGTACACAGCTTTATTCACCAAATTCTCCACCACTTTATTCC 718
||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 787 GTGAGGATCTATCGCCTGAGTACTCAGCTTTATTCACCAAATTCTCCACAACGTTATTCC 846
Query 719 TTCGTCCTGGGCGGTACGAGATGAAGTTCTTAGTGGATGGAGAATGGCAGATCTCACCTG 778
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 847 TTCGTCCCGGGCGGTACGAGATGAAGTTCTTAGTGGATGGAGAATGGCAGATCTCACCCG 906
Query 779 AGTTTCCTACTTCGGGAGAAGGAATGATGGAGAACAATGTTTTAGTGGTGGAATAG 834
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 907 AGTTTCCTACTTCAGGAGAAGGATTGATGGAGAACAATGTTTTAGTGGTGGAATAG 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5