BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891767
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39630.1 | Symbols: | Vesicle transport v-SNARE family prot... 822 0.0
AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-sna... 145 6e-34
> AT5G39630.1 | Symbols: | Vesicle transport v-SNARE family protein
| chr5:15868262-15869714 FORWARD LENGTH=624
Length=624
Score = 822 bits (445), Expect = 0.0
Identities = 548/597 (92%), Gaps = 9/597 (2%)
Strand=Plus/Plus
Query 1 ATGAGTAATGTGTTCCACGAATACGATCGGCAATATAGAGAGCTCT-CAGTAAATCTTTC 59
|||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||
Sbjct 1 ATGAGTAATGTGTTCCACGAATACGATCAGCAATATAGCGAGCTCTCCA-TAAATCTTTC 59
Query 60 AAAGAAGTGTTACTTGGCTTTTTCACTCAAAGGAGGAGAGAAGAAGGAGAAGCTGGCTGA 119
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 60 AAAGAAGTGTTCCTTGGCTTTTTCTCTCAAAGGAGGAGAGAAGAAGGAGAAGCTGTCCGA 119
Query 120 AATAACATCTGATCTGGAAAATGCAGAAAAATTGATTTGGAAAATGGATCATGCAGCAAG 179
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 AATAACATATGATCTGGAAAATGCAGAAAAATTGATTTCGAAAATGGATCATGCAGCAAG 179
Query 180 TAACCTTCCACCCAATATTAAATCCATCCTCCTTGAAAAATTAAGGGAATCTAAATCTAG 239
|||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct 180 TAACCTTCCACCCAATATCAAATCCATCCTTCTTGAAAAATTAAAGGAATCCAAATCGAG 239
Query 240 TCTAAAAAGATTTAAG-AGTGATATCAAGAGGAACACATCTGAAAACTTGAATGTTACTA 298
|||||||||| || || | ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 240 TCTAAAAAGA-TTGAGAAATGAAATCAAGAGGAACACATCTGAAAACTTGAAAGTTACTA 298
Query 299 CTCGAGAAGAAGTTCTTGAAGCTGAAAAGGCGGATTCAGCTGATCAAAGATCAAGATTGA 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 CTCGAGAAGAAGTTCTTGAAGCTGAAAAGGCGGATTTAGCTGATCAAAGATCAAGATTGA 358
Query 359 TGAAATCAACCGAGGGTTTGGCTCGAACAAGAGAGATAATTAAGCAGAGTCGAAGAAAAA 418
||||||||||||||||||||| |||||| |||||||| |||||| | |||| |||||||
Sbjct 359 TGAAATCAACCGAGGGTTTGGTTCGAACTAGAGAGATGATTAAGGACAGTCAAAGAAAAC 418
Query 419 TGATGGAGACCGAAAACATTGGTATTTCAATACTCGAGAACTTGCAAAGTCAGAAAGAGT 478
|| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 TGCTGGAGACTGAAAATATTGGTATTTCAATACTCGAGAACTTGCAAAGGCAGAAAGAGT 478
Query 479 CTCTCCAACGCAGCCAATCTATGCTTCATGAGATAGATGACAATGTCAAAGAGTGCCAGT 538
|||||||| ||||||| |||||||||||||||||||||| | |||||||||| ||| ||
Sbjct 479 CTCTCCAAAACAGCCAAGCTATGCTTCATGAGATAGATGATACTGTCAAAGAGAGCCGGT 538
Query 539 CAATAGTGACAACCATTAAGATCAAGGAATTTTTTACAATGGCTG-CTGCACCAATT 594
|||| |||| || ||| |||||||||||||||||||| || || |||||||||||
Sbjct 539 CAATCGTGAGAAGCATAAAGATCAAGGAATTTTTTAC--TG--TGACTGCACCAATT 591
> AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-snare
13 | chr3:11075836-11077540 REVERSE LENGTH=1351
Length=1351
Score = 145 bits (78), Expect = 6e-34
Identities = 316/423 (75%), Gaps = 48/423 (11%)
Strand=Plus/Plus
Query 159 GAAAATGGATCATGC-A-GCAAGTAACCTTCCACCCAATATTAAATCCA-TCCTCCTTGA 215
||||||||| | | | | ||||| ||||||||||||||| ||||||||| | |||||||
Sbjct 764 GAAAATGGA-CCT-CGAGGCAAGAAACCTTCCACCCAATGTTAAATCCAGT-CTCCTTGT 820
Query 216 AAAATTAAGGGAAT-CTAAATCTAG-TCTAAAAAGATTT-AAGA-GTGATA-TCAAGAGG 270
||||||||||||| | |||||| | ||| || | |||| |||| | || | | |||| |
Sbjct 821 CAAATTAAGGGAATAC-AAATCT-GATCTTAACA-ATTTCAAGACG-GA-AGTGAAGA-G 874
Query 271 AA-CACATCTGAAAACTTGAATGTTACTACTCGAGAAGAAGTT-CTTGAAGCT-G-A--- 323
|| |||||||| |||||| || | |||| ||||||| | |||| || |||||| | |
Sbjct 875 AATCACATCTGGAAACTTAAACGCTACTGCTCGAGATG-AGTTACTAGAAGCTGGTATGG 933
Query 324 ---A-A-A--GGCGGATTCAGCTGATCAAAGATCAAGATTGATGAAATCAACCGAGGGTT 376
| | | | ||| ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 934 CTGACACATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACAGACCATT 993
Query 377 T-GGCTCGAACAAGAGAGATAATTAAGCAGAGTCGAAGAAAAATGA-TGGAGACCGAAAA 434
| ||| ||||| | ||| | ||| ||| | ||| | |||| || | ||||||| ||| |
Sbjct 994 TAGGC-CGAACCACAGACAGAATCAAGGACAGTAGGAGAACGAT-ACTGGAGACAGAAGA 1051
Query 435 -CATTGGTATTTCAATACT-CGAGAACTTGCAAAGTCAGAAAGAGTCTCTCCAACGCAGC 492
| ||||| ||||||| || | || | ||||| | |||| | |||||||| ||| ||
Sbjct 1052 GC-TTGGTGTTTCAATCCTTC-AGGATTTGCACGGGCAGAGACAGTCTCTCTTACGG-GC 1108
Query 493 CAATCTAT-GCTTCATG-AGATAGATGACAATGTC--AAAGAGTGCCAGTCAATAGTGAC 548
| || | |||||||| || | ||||| || ||| |||||| | || |||| ||||
Sbjct 1109 CCATGAAACGCTTCATGGAG-TCGATGATAACGTCGGAAAGAG--CAAGAAAATATTGAC 1165
Query 549 AAC 551
|||
Sbjct 1166 AAC 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5