BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891768

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39620.1 | Symbols: AtRABG1, RABG1 | RAB GTPase homolog G1 |...   318    4e-86
  AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3...  76.8    2e-13


> AT5G39620.1 | Symbols: AtRABG1, RABG1 | RAB GTPase homolog G1 
| chr5:15864166-15865782 REVERSE LENGTH=615
Length=615

 Score =  318 bits (172),  Expect = 4e-86
 Identities = 435/556 (78%), Gaps = 41/556 (7%)
 Strand=Plus/Plus

Query  114  GAAAAGAACAAAGCTGAAGATCATCCTTCTCGGAAATAGCGGGGTAGGCAAAACATCATT  173
            ||||| ||||||||| |||||||| || |||||  ||||||||||||||||||||||| |
Sbjct  4    GAAAA-AACAAAGCTTAAGATCATTCTCCTCGGCGATAGCGGGGTAGGCAAAACATCACT  62

Query  174  GACGAAACGATACATTGGTGAGGAATTTAAG-AGGCTGCAT-ATGAATACAGTCGGA-AT  230
            |  ||| ||||||| ||   |||| |||||| | ||| ||| ||   |||| |   | ||
Sbjct  63   GTTGAAGCGATACAATGACAAGGATTTTAAGCA-GCTACATAAT-TCTACAAT---ATAT  117

Query  231  G--GATTTCA-CCAACAAGGAGCTTTGCGTTG-ACAAAGAACAAGTCACTTTACAAATTT  286
            |  ||||| |  || ||||||| ||||  | | | |||| |||||||| |||||||||||
Sbjct  118  GTAGATTT-AGTCACCAAGGAGATTTGTATCGCAGAAAG-ACAAGTCATTTTACAAATTT  175

Query  287  GGGATACTGCTGGACAAGAAAGATTTCACAGTATAACGTCAGGGTTCTATCGAGACGCAA  346
            |||||||||||||||||||||||||| | ||| || | ||| | ||||| |||||| || 
Sbjct  176  GGGATACTGCTGGACAAGAAAGATTTAAAAGTTTACCATCACGATTCTACCGAGACACAG  235

Query  347  ATTGCTGCGTTCTTGTATACGACGTTAATATTCTCGAATCGTTTGAATCTCTCGACATCT  406
            |||| || ||||| || || ||||| |||| |||  || | ||||||||| |||||| ||
Sbjct  236  ATTGTTGTGTTCTCGTCTATGACGTGAATACTCTTAAAACCTTTGAATCTATCGACAACT  295

Query  407  GGCATGCCCAGTTCGTCGAAGAGGCAGATCCT-ATCACACCTGAC-AAGTTTCGAATTCC  464
            |||| | | ||||  || || ||||| ||||| |  |||||| || |||||||   ||  
Sbjct  296  GGCACGACGAGTTTATCAAACAGGCAAATCCTGAG-ACACCT-ACCAAGTTTCC--TT--  349

Query  465  CTTTGTTTTGATGGGGAACAAAACAGATGTAAA-A--GGCAGAACATCCCC-AGTTGTTG  520
             || ||||||||||| |||||||| |||||||| |  || | || | |||| ||||||||
Sbjct  350  -TT-GTTTTGATGGGCAACAAAACTGATGTAAACAATGG-A-AA-A-CCCCGAGTTGTTG  403

Query  521  AAAAAGAGAAAGCAGTCCAATGGTGTGAGA-CAAAGGGGGAA-ATAGCCTACTTTGAGAC  578
             ||| |||| ||| | ||||||||||| || |||||||| || ||||  |||||||||||
Sbjct  404  CAAAGGAGATAGCTGACCAATGGTGTG-GATCAAAGGGG-AATATAGTATACTTTGAGAC  461

Query  579  CTCGGCAAAGG-AAAAGAGCAATGTTGATGAAGCTTTTATGGAGGTTGCTCGAAAAG-CT  636
             || ||||||| |||| | ||||||||| ||||||||| ||||| | || | ||||| ||
Sbjct  462  TTCAGCAAAGGCAAAA-ATCAATGTTGAAGAAGCTTTTCTGGAGATAGC-CAAAAAGGCT  519

Query  637  CTCTTATATGTGCGTC  652
            |||  | ||| |||||
Sbjct  520  CTCACAAATGAGCGTC  535


> AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog 
G3D | chr1:19467969-19469586 REVERSE LENGTH=939
Length=939

 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand=Plus/Plus

Query  272  TCACTTTACAAATTTGGGATACTGCTGGACAAGAAAGATTTCACAGT  318
            |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  307  TCACTTTACAGATTTGGGATACTGCTGGACAAGAAAGATTTCAAAGT  353



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32350790668


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5