BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891786
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39430.1 | Symbols: | Protein of unknown function (DUF1336)... 2209 0.0
AT3G29180.1 | Symbols: | Protein of unknown function (DUF1336)... 1040 0.0
> AT5G39430.1 | Symbols: | Protein of unknown function (DUF1336)
| chr5:15775302-15777599 REVERSE LENGTH=1536
Length=1536
Score = 2209 bits (1196), Expect = 0.0
Identities = 1437/1549 (93%), Gaps = 34/1549 (2%)
Strand=Plus/Plus
Query 1 ATGGGTACATGTATGTCAACTCATTCAAGAAGAATTAGGCCACGAAGGAAAGGTCGTCGG 60
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 1 ATGGGTACATGTATGTCAACACATTCAAGAAGACTTAGGCCACGAAGGAAAGGCCGTCGC 60
Query 61 AGA-TTTCCAAAACACATTTCTAGAGTGTCTGATATTATTTCTCATCCAAATATTAGACG 119
||| |||| |||| |||| |||| |||||||| ||||||||||
Sbjct 61 AGATTTTCTAAAA-ACATATCTAAAGTGTCTG------------------ATATTAGACG 101
Query 120 ACTAAGTGATGTTGGAATCCAAACCTCTTTTGATATTTCTCAAAACGATGCGTGGTTTGA 179
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 102 CCTAAGTGATGTTGGAATCCAAACCTCTTTTGATATTTCTCAAAACGATGCATGGTTTGA 161
Query 180 TTCTTCAAGTCTTTTCTCTGACTCTGATGACGACTTTATTAGCCTACATGAAGCTGATAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TTCTTCAAGTCTTTTCTCTGACTCTGATGACGACTTTATTAGCCTACATGAAGCTGATAA 221
Query 240 TGTTTGGTTAGAGGGTGGTGTAATGGGTAATATTCCAAATGGTCAGGTGGTTCAGTTTGA 299
|||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||
Sbjct 222 TGTTTGGTTAGAGGGTGGCGTAATGGGTAAAATTCCAAATGGTCAAGTGGTTGAGTTTGA 281
Query 300 GACTTCTTCATGCATTGTTGATGGAAATGGAAATTATGAAGAATACCATGAGAGTTACTT 359
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 282 GGCTTCTTCATGCATTGTTGATGGAAATGGAAATTACGAAGAATACCATGAGAGTTACTT 341
Query 360 GAAAATTGATGGCGGCAATAAAATCGAGAAGTTTATGAGCAACGGTTTATACAAAGATAC 419
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 342 GAAGATTGATGGCGGTAATAAAATCGAGAAGTTTATGAGCAACGGTTTATATAAAGATAC 401
Query 420 TAATAGTTTGTCTATTATCACTGGAAACAACAAGAATAAACAATTGGACCATACTTATAG 479
|||| |||||||| ||| | ||||||||||||||| |||| | | ||||||||||
Sbjct 402 TAATGGTTTGTCTGGTATTATTGGAAACAACAAGAAGAAAC---T--A-AATACTTATAG 455
Query 480 AAGCTTTAAAGTATTGAAAGAAATAGACCCTAACCCTCAAGAAAAAACATTAAAATCCAA 539
|||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 456 TAGCTTTAAAGGATTGAAAGAGTTAGACCCTAACCCTAAAGAAAAAGCATTAAAATCCAA 515
Query 540 TTTGAGCCGG-T--TG--A-TGCCAACCGTTAGTTTCAACGACAAGACTCTAAACTCCCC 593
|||||||||| | || | ||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 516 TTTGAGCCGGTTGATGCCATTGCCAACGGTTAGTTTCAACGACAAAACTCTGAACTCCCC 575
Query 594 CACATCTCAAAAGCGGAAGTCAGCGGTTTATCAGACTTCTTTCAAGAGGAGATCATGTGA 653
|||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 576 CACATCTCAAAACCGGAAGTCAGCGGTTTATCAGGTTTCTTTCAAGAGAAGATCATGTGA 635
Query 654 TGGTGAAGAAGTTACCGAGCATAGGTCGTCCAAAAGATTGTTGTACCGTCCCAAAGCCGG 713
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 636 TGGTGAAGAAGTTACCGAACATAGGTCGTCGAAAAGATTGTTGTACCGTCCCAAAGCCGG 695
Query 714 ATACACCATTCCGTGCTATGCCAATGAGAAGCAGCAATCATCAGGAAGTTGGTGTGAGAT 773
|||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 696 ATACACGATTCCGTGCTATGTCAAAGAGAAGCATCAATCATCAGGAAGTTGGTGTGAGAT 755
Query 774 ACCTCCTTCAAACTTGAAATTACGTGGCGAAACTTATTTCAAAGATAAACGAAAATATCC 833
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 756 ACCTCCATCAAACTTGAAGTTACGTGGCGAAACTTATTTCAAAGATAAACGAAAACACCC 815
Query 834 GGCTCCAAACCAATGTCCATACACTCCAATTGGTGTTGACTTGTTTGTGTGTCCAAAAAA 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 816 GGCTCCAAACCAATGTCCATACACTCCAATTGGTGTTGACTTGTTTGTGTGTCCAAGGAA 875
Query 894 GATTGATCATATAGCCCAACACATTGAACTTCCCAACATCAAAGCCGAGGTGAAGTTCCC 953
||||||||||||||||||||||||||| ||||||||||||||||| | || || ||||
Sbjct 876 GATTGATCATATAGCCCAACACATTGAGCTTCCCAACATCAAAGCTGTGGCAAACCTCCC 935
Query 954 TGCTCTTTTGATTGTCAACATCCAGTTGCCAACTTATCCAGCCGCAATGTTTCTCGGTGA 1013
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TGCTCTTCTAATTGTCAACATCCAGTTGCCAACTTATCCAGCCGCAATGTTTCTCGGTGA 995
Query 1014 TAGTAATGGAGAAGGCATGAGCATTGTACTTTATTTTAAATTAAGAGAAAATTTCGAAAA 1073
|||||| |||||||||||||||||||||||||| |||||| || ||||||||||| ||||
Sbjct 996 TAGTAACGGAGAAGGCATGAGCATTGTACTTTACTTTAAACTACGAGAAAATTTC-AAAA 1054
Query 1074 A-GAAATCTCTCAACAATACCAAGACAGCATCAAGAAACTAGTGGAGGATGAGATGGAAA 1132
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1055 ATGAAATCTCTCAACAATACCAAGACAGCATCAAGAAACTAGTGGAAGATGAGATGGAAA 1114
Query 1133 AAGTGAAAGGGTTTGCAAAAGACAACATTGTTCCATTTCGTGAACGGCTTAAAATCGTAG 1192
|||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||
Sbjct 1115 AAGTTAAAGGGTTTGCAAAAGACAACATCGTTCCGTTTCGTGAAAGGCTTAAAATAGTAG 1174
Query 1193 CCGGATTAGTTAACCCAGAGGAACTCAGCCTTAGTTCTACTGAAAGGAAGCTTATACAAG 1252
||||||||||||||||||| |||||||| || ||||||||||||| ||||||||||||||
Sbjct 1175 CCGGATTAGTTAACCCAGATGAACTCAGTCTGAGTTCTACTGAAAAGAAGCTTATACAAG 1234
Query 1253 CTTACAATGAAAAACCCGTGCTTTCTCGCCCTCAACACAACTTCTTCAAGGGTCCTAACT 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 CTTACAATGAAAAACCCGTGCTTTCTCGCCCTCAACACAACTTCTTCAAGGGTCCTAACT 1294
Query 1313 ACTTTGAGATTGATTTGGACGTGCATCGGTTTAGCTACCTCTCAAGAAAAGGGCTTGAAG 1372
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1295 ACTTTGAGATTGATTTGGACGTGCATCGGTTTAGCTACCTTTCAAGAAAAGGGCTTGAAG 1354
Query 1373 CATTCAGAGATCGACTTAAAAATGGAACTCTTGATCTCGGCTTAACTATCCAAGCTCAAA 1432
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CATTCAGAGATCGACTCAAAAATGGAACTCTTGATCTCGGCTTAACTATCCAAGCTCAAA 1414
Query 1433 AACAAGAGGAGTTACCAGAAAAGGTCTTATGTTGTCTAAGATTAAGCAAGATTGACTTTG 1492
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1415 AACAAGAGGAGTTACCAGAAAAGGTCCTATGTTGTCTAAGATTGAGCAAGATTGACTTTG 1474
Query 1493 TTGACAACGGTCAAATTCCGACACTTTTAATTCCTGAAGAAGGAGAATC 1541
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1475 TTGACAACGGTCAAATTCCTACACTTTTAATTCCTGAAGAAGGAGAATC 1523
> AT3G29180.1 | Symbols: | Protein of unknown function (DUF1336)
| chr3:11148215-11151560 FORWARD LENGTH=2009
Length=2009
Score = 1040 bits (563), Expect = 0.0
Identities = 1253/1578 (79%), Gaps = 79/1578 (5%)
Strand=Plus/Plus
Query 1 ATGGGTACATGTATGTCAACTCATTCAAGAAG-AATTAGGCC-ACGAAGGAAAGGTCGTC 58
|||||| |||| ||||||| ||||||| ||| |||||||| | | |||||||| ||||
Sbjct 230 ATGGGTGGATGTGTGTCAACCCATTCAA-AAGCGATTAGGCCTA-GGAGGAAAGGCCGTC 287
Query 59 GGAGAT-TTCCAAAACACATTTCTAGAGTGTCTGATATTATTTCTCATCCAAATATTAG- 116
| |||| |||| |||||| |||||| ||||||||||||| || ||||| | ||||||||
Sbjct 288 GTAGATCTTCC-AAACACTTTTCTAAAGTGTCTGATATTGTTCCTCATGCTAATATTAGA 346
Query 117 ACGACTAAGTGATGTTGGAATCCAAACCTCTTTTGATATTTCTCAAAACGATGCGTGGTT 176
| | || ||||| ||||| | || | ||||||| ||| || ||| | ||||| |||||
Sbjct 347 AGGCCT-AGTGACGTTGGGAGCCGAGTTTCTTTTGCTATCTCGCAAGATGATGCATGGTT 405
Query 177 TGATTCT-TCAAGTCTT-TT--CTCTGACT-CTGATGACGACTTTATTAGCCTACATGAA 231
||| ||| || ||| || || || || | ||||| |||||||| ||| ||| ||||
Sbjct 406 TGACTCTGTC-AGTGTTCTTGATTCGGA-TGAGGATGAGGACTTTATCAGCTTACCTGAA 463
Query 232 GCTGA--TA--ATGTTTG--GTTAGAGGGTGGTG-TAATGGGT---AATATTCCAAATGG 281
| | || || | | || |||||||| | | ||| ||||| ||||||||
Sbjct 464 GAAAACGTACCATCAACGCCATCAGCGGGTGGTGCGACT-GGTAACAATATACCAAATGG 522
Query 282 TCAGGTGGTTCAGTTTGAGA-CTTCTTCATGCATT-GTTGATGG-AAATGGAAATTATGA 338
||| || ||||||||||| | ||||||| ||| || || ||||| ||| ||||| || ||
Sbjct 523 TCAAGTAGTTCAGTTTGA-ATCTTCTTCGTGC-TTCGTGGATGGTAAA-GGAAAGTACGA 579
Query 339 AGAATACCATGAGAGTTACTTGAAAATTGATGGCGGCAATAAAATCGAGAAGTTTATGAG 398
|||||||||||||| ||||||||| | | | | ||| | |||| |||||||||| ||
Sbjct 580 AGAATACCATGAGACTTACTTGAAGA-T-A-GACGGGAGTAAAGCCGAGAAGTTTGTG-T 635
Query 399 C-AACGGTTTATACAAAGATACTAATAGTTTGTCTATTATCACTGGAAACAACAAGAATA 457
| || || | ||||| ||| | | | || | ||| || | ||||||||||||||||| |
Sbjct 636 CAAAAGGGATGTACAAGGATCCGAGTGGTCTCTCTGTTCTTACTGGAAACAACAAGAAGA 695
Query 458 AAC-AATTGGACCATACTTATAGAAGCTTTAAAGTATTGAAAGAAATAGACCCTAACCCT 516
||| | |||||||| | ||||||||||| ||||| || | | | |||| ||
Sbjct 696 AACTGA-TGGACCATGC------AAGCTTTAAAGGCTTGAAGGATCCAAAACGTAACTCT 748
Query 517 CAAGA-AAAAACATTAAAATCCAATTTGAGCCGGTTGATGCCAACCGTTAGTTTCAACGA 575
||||| |||| | | | || ||| ||||||||||||||||||| || ||||| || ||
Sbjct 749 CAAGAGAAAACCCTGAGAA-CCAGCCTGAGCCGGTTGATGCCAACAGTCAGTTTTAATGA 807
Query 576 CAAGACTCTAAACTCCCCCACATCTCA-AAAGCGGAAGTCAGCGGTTTATCAGAC-TTCT 633
||||||||||||||| ||||||||||| ||| || || || || ||||||| | | ||||
Sbjct 808 CAAGACTCTAAACTCACCCACATCTCAGAAA-CGAAAATCCGCTGTTTATC-GGCTTTCT 865
Query 634 TTCAAGAGGAGATCATGTGATGGTGAAGAAGTTACCGAGCATAGGTCGTCCAAAAGATTG 693
||||| ||||| || ||||||||||| |||||||| ||||| | ||| ||| |||
Sbjct 866 TTCAAAAGGAGGTCGTGTGATGGTGAGGAAGTTACTGAGCA-A---CGT----AAG-TTG 916
Query 694 TTGTACCGTCCCAAAGCCGGATACACCATTCCGTGCTATGCCAATGAGAAGCAGCAATC- 752
||||||||||| ||||| |||| ||| ||||| | || | | | ||||| |||| ||
Sbjct 917 TTGTACCGTCCAAAAGCGGGATTCACAATTCCTTCCTCGGGC-A-GAGAA-AAGCAGTCT 973
Query 753 ATCAGGAAGTTGGTGTGAGATACCTCCTTCAAAC-TTGAAATTACGTGGCGAAACTTATT 811
| | |||||||||| ||||||||| ||||| ||| || ||| | ||||| ||||| ||||
Sbjct 974 AGC-GGAAGTTGGTCTGAGATACCGCCTTC-AACTTTTAAACTCCGTGGAGAAACCTATT 1031
Query 812 TCAAAGA-TAAACGAAAATATCCGGCTCCAAACCAATGTCCATACACTCCAATTGGTGTT 870
||||||| ||| | |||| || |||||||| || |||||||||||||| || ||||||
Sbjct 1032 TCAAAGACAAAAAG-AAATCCCCAGCTCCAAATCAGTGTCCATACACTCCTATAGGTGTT 1090
Query 871 GACTTGTTTGTGTGTCCAAAAAAGATTGATCATATAGCCCAACACATTGAACTTCCCAAC 930
||||||||||| ||||||| |||||||||||||| ||||||||||| || ||||| |||
Sbjct 1091 GACTTGTTTGTCTGTCCAAGGAAGATTGATCATATCGCCCAACACATCGAGCTTCCAAAC 1150
Query 931 ATCAAAGCCGAGGTGAAGTTCCCTGCTCTT-TTGATTGTCAACATCCAGTTGCCAACTTA 989
||||||||||||| ||| ||||||||||| ||| |||||||||| ||||| ||||| ||
Sbjct 1151 ATCAAAGCCGAGGCAAAGCTCCCTGCTCTTCTTG-TTGTCAACATTCAGTTACCAACCTA 1209
Query 990 TCCAGCCGCAATGTTTCTCGGTGATAGTAATGGAGAAGGCATGAGCATTGTACTTTATTT 1049
||| || |||||||| || || || ||| |||||||||||||||||||||||||||||||
Sbjct 1210 TCCTGCTGCAATGTTCCTTGGGGACAGTGATGGAGAAGGCATGAGCATTGTACTTTATTT 1269
Query 1050 TAAATTAAGAGAAAATTTCGAAAAAGAAATCTCTCAACAATACCAAGACAGCATCAAGAA 1109
||||||| |||| ||| ||||||||||| |||||| ||||| || || |||||||||||
Sbjct 1270 TAAATTACGAGACAATCACGAAAAAGAAACCTCTCAGCAATATCAGGAGAGCATCAAGAA 1329
Query 1110 ACTAGTGGAGGATGAGATGGAAAAAGTGAAAGGGTTTGCAAAAGACAACATTGTTCCATT 1169
||| || | ||||||||||| || || ||||||||||| ||||||| || ||| | ||
Sbjct 1330 ACTTGTCAATGATGAGATGGAGAAGGTAAAAGGGTTTGCTAAAGACAGCAACGTTGC-TT 1388
Query 1170 TC-GTGAACGGCTTAAAATCGTAGCCGGA-TTAGTTAACCCAGAGGAACTCAGC-CTTAG 1226
|| ||||| ||||||| || ||||| ||| || |||||||| || || || ||| || ||
Sbjct 1389 TCCGTGAAAGGCTTAAGATAGTAGCTGGACTT-GTTAACCCCGAAGATCT-AGCTCTAAG 1446
Query 1227 TTCTACTGAAAGGAAGCTTATACAAGCTTACAATGAAAAACCCGTGCTTTCTCGCCCTCA 1286
|| ||||||| ||||||| |||| ||||||||||||||||| || || ||||| |||||
Sbjct 1447 CTCGACTGAAAAGAAGCTTGTACAGGCTTACAATGAAAAACCTGTCCTCTCTCGTCCTCA 1506
Query 1287 ACACAACTTCTTCAAGGGTCCTAACTACTTTGAGATTGATTTGGACGTGCATCGGTTTAG 1346
|||||||||||| |||||||| |||||||| ||||||||| |||| || ||||| || ||
Sbjct 1507 ACACAACTTCTTTAAGGGTCCAAACTACTTCGAGATTGATCTGGATGTACATCGATTCAG 1566
Query 1347 CTACCTCTCAAGAAAAGGGCTTGAAGCATTCAGAGATCGACTTAAAAATGGAACTCTTGA 1406
|||| | || ||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1567 CTACATATCTCGAAAAGGACTTGAAGCATTCAGAGATCGACTAAAAAACGGAACTCTTGA 1626
Query 1407 TCTCGGCTTAACTATCCAAGCTCAAAAACAAGAGGAGTTACCAGAA-AAGGTCTTATGTT 1465
|||||||||||| ||||| |||||||||| || ||| | || ||| ||| || |||| |
Sbjct 1627 TCTCGGCTTAACCATCCAGGCTCAAAAACCGGAAGAGCTGCCGGAACAAG-TCCTATGCT 1685
Query 1466 GTCTAAGATTAAGCAAGATTGACTTTGTTGACAACGGTCAAATTCCGACACTTTTAATTC 1525
|||| || | |||||||||||||| || ||| ||||||| || || | ||||| || |
Sbjct 1686 GTCTGAGGCTGAGCAAGATTGACTTCGTAGACCACGGTCAGATCCCAATGCTTTTGATCC 1745
Query 1526 CTGAAGAAGGAGAATCTC 1543
| || || || ||| |||
Sbjct 1746 CGGAGGATGGGGAAACTC 1763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5