BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891799

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   435    3e-121


> AT1G54680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G27290.1); 
Has 200 Blast hits to 200 proteins in 57 species: Archae 
- 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 127; 
Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 
| chr1:20413135-20414574 FORWARD LENGTH=840
Length=840

 Score =  435 bits (235),  Expect = 3e-121
 Identities = 282/305 (92%), Gaps = 2/305 (1%)
 Strand=Plus/Plus

Query  234  TTGGTCATTGATTGATTCGGTCTCTAGAAGCATTGAATCTGTTTATGTCGAAGAGGATTC  293
            |||||| ||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||
Sbjct  109  TTGGTCGTTGATTGATTCTGTCTCCAGAAGTATTGAATCTGTTTATGTCCAAGAGGATTC  168

Query  294  AGTGAGAATTTCCAAAGAGGA-GGAAACTAAAACTTCACCTGAAGAAGATTGGTTCGCTG  352
            ||||||||  |||||||| || ||||| |||||||||||||||||||||||||||| |||
Sbjct  169  AGTGAGAACATCCAAAGA-GATGGAAATTAAAACTTCACCTGAAGAAGATTGGTTCTCTG  227

Query  353  TTGTTCAGCATGAATCTGGGCATTTTCTTGTTGGTTACTTGCTTGGTGTTCTTCCAAGAT  412
            |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| 
Sbjct  228  TTGTTCAGCATGAATCAGGGCATTTTCTTGTTGGTTACTTGCTTGGAGTTCTCCCAAGAC  287

Query  413  ACTATGAAATACCAACCTTGGAAGCTGTAAGGCAGAATGTGTCGAGTGTGACAGGGAGAG  472
            |||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct  288  ACTATGAAATACCAACTTTGGAAGCTGTTAGGCAGAATGTGTCGAATGTGACCGGGAGAG  347

Query  473  TAGAATTTGTGGGTTTTGAGTTCCTCAAACAAGTTGGTGCTGCAAACCAGCTAATGAAAG  532
            ||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct  348  TAGAATTTGTGGGGTTTGAATTCCTCAAACAAGTCGGTGCTGCAAACCAGCTTATGAAAG  407

Query  533  ATGAT  537
            |||||
Sbjct  408  ATGAT  412


 Score =  172 bits (93),  Expect = 3e-42
 Identities = 104/109 (95%), Gaps = 2/109 (2%)
 Strand=Plus/Plus

Query  88   AGAGT-GAGTAAAGAACTCTCAAGAGGCAATTACGAAACTGCTCTCTCTCTCGTCAAGCA  146
            ||||| || ||||||||||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct  4    AGAGTGGA-TAAAGAACTCTTAAGAGGCAATTACGAAACTGCTCTCTCACTCGTCAAACA  62

Query  147  ACTCAAGAGCAAACATGGCTGCTTATCTGCTTTTGGCTCTGCTAAATTG  195
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   ACTCAAGAGCAAACATGGCTGCTTATCTGCTTTTGGCTCTGCTAAATTG  111



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5