BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891825
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 821 0.0
AT5G39140.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 579 1e-164
AT5G39170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 573 6e-163
> AT5G39200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G39140.1);
Has 65 Blast hits to 65 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:15694307-15695042
REVERSE LENGTH=606
Length=606
Score = 821 bits (444), Expect = 0.0
Identities = 555/607 (91%), Gaps = 14/607 (2%)
Strand=Plus/Plus
Query 1 ATGGACCAGGAAACTAAACCAGGCTATGAACCGGATCGGATTCCACATTCGATTTTCGCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1 ATGGACCAGGAAACTAAACCAGGCTATGAACCGGATCGGATTCCACATTCGGTTTTTGCA 60
Query 61 ACCTCGATAACTCCTAAACAAGAATGGAGTATCCAATCGAACGAATCTTTGTTCAGTATT 120
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ACCTCGGTAACTCCAAAACAAGAATGGAGTATCCAATCGAACGAGTCTTTGTTCAGTATT 120
Query 121 CACATGGGAGACCATAGTTTCTCCAAAATGTATAAATCTGGAGAACTCACCAATTTCGAA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CACATGGGAGACCATAGTTTCTCCAAGATGTATAAATCTGGAGAACTCACCAATTTCGAA 180
Query 181 TATACTGCTTCGCCCTATATTAGCTACAATAACAACAACATTGATAACAAAAACACTTTG 240
||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |
Sbjct 181 TATACTGCTTCGCCCTATATTAGCTACTATAACAATAACATTGATAACAAAATTGCTCCG 240
Query 241 ACCGACCCTGGAACGAAAGAAGTCAATATAACCGTAGTAGAGACGGGACCAAAA-CCTGG 299
|| ||| ||||||| |||||||||||||||||| | || || || ||||||||| || ||
Sbjct 241 ACTGACGCTGGAACCAAAGAAGTCAATATAACCATGGTGGAAACCGGACCAAAAACC-GG 299
Query 300 TAATCGAGATGGCTTAATCAATGTTCCAAAACCGGATCCACGACAGCAGATTCCTATTTC 359
||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 300 TAATCGAGATGGCTTAACCAATGTTCCTAAACCGGATCCACGACAACAGATTCCTATTTC 359
Query 360 TCCGACCAAGTCTTATCACTCTGAAACAAGTAATAACAGTGCAGCTTCTTTCGCATTTCC 419
||| |||||||||| |||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 360 TCCAACCAAGTCTTGTCACTCCGAAACAAGTAATAACAGTACAACTTCTTTCGCATTTCC 419
Query 420 CACATTAGGAGAGTACCAACAAGAACGAAAGACATCACTAAACATGAAGAGTGAAAGTGG 479
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 420 CACATTAGGAGAGTACCAACAAGAGCGAAAGACATCACTAAACACGAAGAGTGAAAGTGG 479
Query 480 AAAAAGAGAACTATCAAGACTCGACTCGAAGACCGGTTTGTACCAGGATGCTTCGAAACA 539
||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||
Sbjct 480 AAAAAGAGAACTATCAAGACTTGACTCGAAGACCGGATTGTACCCGGATGATTCGAAACA 539
Query 540 GGGCGGTGCTGGTG--G-T--TGG-------CTTTCTTGTTTTCTCTGTTTTTCCGAGAA 587
|||||||||||||| | | ||| |||||||||| |||||||||||| | |||
Sbjct 540 GGGCGGTGCTGGTGCTGGTGCTGGTGGTTGGCTTTCTTGTTGTCTCTGTTTTTCGGTGAA 599
Query 588 AAATTGA 594
|||||||
Sbjct 600 AAATTGA 606
> AT5G39140.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G39200.1);
Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr5:15667173-15667761
REVERSE LENGTH=459
Length=459
Score = 579 bits (313), Expect = 1e-164
Identities = 376/407 (92%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 148 ATGTATAAATCTGGAGAACTCACCAATTTCGAATATACTGCTTCGCCCTATATTAGCTAC 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTATAAATCTGGAGAACTCACCAATTTCGAATATACTGCTTCGCCCTATATTAGCTAC 60
Query 208 AATAACAACAACATTGATAACAAAAACACTTTGACCGACCCTGGAACGAAAGAAGTCAAT 267
||||||| |||||||||||||||| || ||| ||| ||||||| ||||||||||||
Sbjct 61 TATAACAATAACATTGATAACAAAATTGCTCCGACTGACGCTGGAACCAAAGAAGTCAAT 120
Query 268 ATAACCGTAGTAGAGACGGGACCAAAA-CCTGGTAATCGAGATGGCTTAATCAATGTTCC 326
|||||| | || || || ||||||||| || ||||||||||||||||||| |||||||||
Sbjct 121 ATAACCATGGTGGAAACCGGACCAAAAACC-GGTAATCGAGATGGCTTAACCAATGTTCC 179
Query 327 AAAACCGGATCCACGACAGCAGATTCCTATTTCTCCGACCAAGTCTTATCACTCTGAAAC 386
||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||
Sbjct 180 TAAACCGGATCCACGACAACAGATTCCTATTTCTCCAACCAAGTCTTGTCACTCCGAAAC 239
Query 387 AAGTAATAACAGTGCAGCTTCTTTCGCATTTCCCACATTAGGAGAGTACCAACAAGAACG 446
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AAGTAATAACAGTACAACTTCTTTCGCATTTCCCACATTAGGAGAGTACCAACAAGAGCG 299
Query 447 AAAGACATCACTAAACATGAAGAGTGAAAGTGGAAAAAGAGAACTATCAAGACTCGACTC 506
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 AAAGACATCACTAAACACGAAGAGTGAAAGTGGAAAAAGAGAACTATCAAGACTTGACTC 359
Query 507 GAAGACCGGTTTGTACCAGGATGCTTCGAAACAGGGCGGTGCTGGTG 553
||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 360 GAAGACCGGATTGTACCCGGATGATTCGAAACAGGGCGGTGCTGGTG 406
> AT5G39170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G39200.1);
Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr5:15680731-15681325
REVERSE LENGTH=465
Length=465
Score = 573 bits (310), Expect = 6e-163
Identities = 375/407 (92%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 148 ATGTATAAATCTGGAGAACTCACCAATTTCGAATATACTGCTTCGCCCTATATTAGCTAC 207
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTATAAATTTGGAGAACTCACCAATTTCGAATATACTGCTTCGCCCTATATTAGCTAC 60
Query 208 AATAACAACAACATTGATAACAAAAACACTTTGACCGACCCTGGAACGAAAGAAGTCAAT 267
||||||| |||||||||||||||| || ||| ||| ||||||| ||||||||||||
Sbjct 61 TATAACAATAACATTGATAACAAAATTGCTCCGACTGACGCTGGAACCAAAGAAGTCAAT 120
Query 268 ATAACCGTAGTAGAGACGGGACCAAAA-CCTGGTAATCGAGATGGCTTAATCAATGTTCC 326
|||||| | || || || ||||||||| || ||||||||||||||||||| |||||||||
Sbjct 121 ATAACCATGGTGGAAACCGGACCAAAAACC-GGTAATCGAGATGGCTTAACCAATGTTCC 179
Query 327 AAAACCGGATCCACGACAGCAGATTCCTATTTCTCCGACCAAGTCTTATCACTCTGAAAC 386
||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||
Sbjct 180 TAAACCGGATCCACGACAACAGATTCCTATTTCTCCAACCAAGTCTTGTCACTCCGAAAC 239
Query 387 AAGTAATAACAGTGCAGCTTCTTTCGCATTTCCCACATTAGGAGAGTACCAACAAGAACG 446
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AAGTAATAACAGTACAACTTCTTTCGCATTTCCCACATTAGGAGAGTACCAACAAGAGCG 299
Query 447 AAAGACATCACTAAACATGAAGAGTGAAAGTGGAAAAAGAGAACTATCAAGACTCGACTC 506
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 AAAGACATCACTAAACACGAAGAGTGAAAGTGGAAAAAGAGAACTATCAAGACTTGACTC 359
Query 507 GAAGACCGGTTTGTACCAGGATGCTTCGAAACAGGGCGGTGCTGGTG 553
||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 360 GAAGACCGGATTGTACCCGGATGATTCGAAACAGGGCGGTGCTGGTG 406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5