BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891827
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39110.1 | Symbols: | RmlC-like cupins superfamily protein ... 689 0.0
AT5G39120.1 | Symbols: | RmlC-like cupins superfamily protein ... 665 0.0
AT5G39100.1 | Symbols: GLP6 | germin-like protein 6 | chr5:1565... 662 0.0
AT5G39150.1 | Symbols: | RmlC-like cupins superfamily protein ... 660 0.0
AT5G39180.1 | Symbols: | RmlC-like cupins superfamily protein ... 654 0.0
> AT5G39110.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15657802-15658584 REVERSE LENGTH=669
Length=669
Score = 689 bits (373), Expect = 0.0
Identities = 542/623 (87%), Gaps = 13/623 (2%)
Strand=Plus/Plus
Query 43 TTGGTCATTCCCTTTTCC-AATGCTTATGATCCGAGTCCACTCCAAGACTTCTGTGTGGC 101
||||||||| ||||| || || ||| ||||||| |||||||| |||||||| ||||||||
Sbjct 43 TTGGTCATTTCCTTTGCCGAA-GCTAATGATCCAAGTCCACTTCAAGACTTTTGTGTGGC 101
Query 102 CGTTGGTAACCTCAACAA---TGTTTTTGTGAATGGTAAGTTCTGTAAGGATCCAAAGCA 158
| |||| ||||||| || ||||||||||||||||||||| || ||||||||||||||
Sbjct 102 CATTGGCGACCTCAAAAATGGTGTTTTTGTGAATGGTAAGTTTTGCAAGGATCCAAAGCA 161
Query 159 AGCGAAGGCGGAAGACTTCTTCTACTCAGGTCTCAA-CAAGGCCGGAAGCACCAATAATA 217
||| ||||| ||||| ||||| |||||||| ||||| ||| || |||| ||| |||||||
Sbjct 162 AGCAAAGGCAGAAGATTTCTTTTACTCAGGCCTCAACCAA-GCAGGAACCACTAATAATA 220
Query 218 ATGTCAAATCCAACGTCACAACAGTGAATGTTGATCAGATTCCAGGGCTAAACACTATGG 277
| |||||||||||||| |||||||| ||||| ||||||||||||||| |||||||| |||
Sbjct 221 AAGTCAAATCCAACGTGACAACAGTCAATGTCGATCAGATTCCAGGGTTAAACACTTTGG 280
Query 278 GAATATCATTGGTTCGCATAGACTATGCGCCTTATGGCCAAAACCCGCCTCACACACACC 337
||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 281 GAATATCCTTGGTCCGCATAGACTATGCGCCATATGGTCAAAACCCGCCTCACACACACC 340
Query 338 CGCGTGCCACTGAAATCCTTGTCCTTGTCGAGGGAACGTTATATGTTGGGTTTGTCTCTT 397
| ||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct 341 CTCGTGCCACTGAGATCCTTGTTCTTGTTGAGGGAACATTATATGTTGGTTTTGTCTCTT 400
Query 398 CCAATCAAGACAATAACCGTCTT-TTCGCCAAAATTTTGCACCCCGGTGATGTGTTCGTG 456
||||||||||||| |||||| || ||||| ||| | || |||| || || ||||| |||
Sbjct 401 CCAATCAAGACAACAACCGT-TTATTCGCTAAAGTGCTGAACCCGGGCGACGTGTTTGTG 459
Query 457 TTCCCCATAGGGATGATTCATTTTCAAGTGAATATCGGGAAGACCCCCGCGGTTGCCTTT 516
||||||||||| ||||| ||||||||||||||||||||||||||||| || || ||||||
Sbjct 460 TTCCCCATAGGAATGATCCATTTTCAAGTGAATATCGGGAAGACCCCTGCAGTGGCCTTT 519
Query 517 GCCGGACTTAGTAGTCAGAACGCTGGTGTCATCACAATTGCAAACACTGTGTTTGGTTCG 576
|| ||||| |||||||| || |||||||||||||| |||||| | ||||||||||| ||
Sbjct 520 GCTGGACTAAGTAGTCAAAATGCTGGTGTCATCACGATTGCAGATACTGTGTTTGGGTC- 578
Query 577 AAA-CCTCCCATTTATCCAGA-AGTTCTGGCTCAGGCATTTCAGTTAGATGTGAATGTCG 634
|| ||||| ||| ||||||| | || |||||||||| ||||||||||| || ||||| |
Sbjct 579 AACGCCTCCGATTAATCCAGATATTT-TGGCTCAGGCGTTTCAGTTAGACGTCAATGTTG 637
Query 635 TCAAAGACCTTGAGGCCAAGTTT 657
| |||||||||||||||||||||
Sbjct 638 TTAAAGACCTTGAGGCCAAGTTT 660
> AT5G39120.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15662705-15663486 REVERSE LENGTH=666
Length=666
Score = 665 bits (360), Expect = 0.0
Identities = 527/607 (87%), Gaps = 13/607 (2%)
Strand=Plus/Plus
Query 59 CCAATGCTTATGATCCGAGTCCACTCCAAGACTTCTGTGTGGCCGTTGGT-AACCTCAAC 117
|||| || |||||||| |||||||| |||||||||||||| ||| ||| | | ||| ||
Sbjct 56 CCAAAGCATATGATCCAAGTCCACTTCAAGACTTCTGTGTTGCCATTGATGACCCT-AAA 114
Query 118 AA---TGTTTTTGTGAATGGTAAGTTCTGTAAGGATCCAAAGCAAGCGAAGGCGGAAGAC 174
|| ||||||||||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct 115 AATGGTGTTTTTGTGAATGGTAAGTTTTGCAAGGATCCAAAGCAAGCAAAGGCAGAAGAT 174
Query 175 TTCTTCTACTCAGGTCTCAA-CAAGGCCGGAAGCACCAATAATAATGTCAAATCCAACGT 233
||||| | |||||| ||||| ||| || |||| ||| ||||| || ||||||||||||||
Sbjct 175 TTCTTTTCCTCAGGCCTCAACCAA-GCAGGAATCACTAATAACAAAGTCAAATCCAACGT 233
Query 234 CACAACAGTGAATGTTGATCAGATTCCAGGGCTAAACACTATGGGAATATCATTGGTTCG 293
|||||||| ||||| ||||||||||||||| |||||||| |||||||||| ||||| ||
Sbjct 234 GACAACAGTCAATGTCGATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCG 293
Query 294 CATAGACTATGCGCCTTATGGCCAAAACCCGCCTCACACACACCCGCGTGCCACTGAAAT 353
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 294 CATAGACTATGCGCCATATGGTCAAAACCCGCCTCACACACACCCTCGTGCCACTGAGAT 353
Query 354 CCTTGTCCTTGTCGAGGGAACGTTATATGTTGGGTTTGTCTCTTCCAATCAAGACAATAA 413
|||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 354 CCTTGTTCTTGTTGAAGGAACGTTATATGTTGGTTTTGTCTCTTCGAATCAAGACAACAA 413
Query 414 CCGTCTT-TTCGCCAAAATTTTGCACCCCGGTGATGTGTTCGTGTTCCCCATAGGGATGA 472
|||| || ||||||||| | || |||| || || |||||||||||||||||||| ||||
Sbjct 414 CCGT-TTATTCGCCAAAGTGCTGAACCCGGGAGACGTGTTCGTGTTCCCCATAGGAATGA 472
Query 473 TTCATTTTCAAGTGAATATCGGGAAGACCCCCGCGGTTGCCTTTGCCGGACTTAGTAGTC 532
| |||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||
Sbjct 473 TCCATTTTCAAGTGAATATCGGGAAGACCCCCGCAGTGGCCTTTGCTGGACTAAGTAGTC 532
Query 533 AGAACGCTGGTGTCATCACAATTGCAAACACTGTGTTTGGTTCGAAA-CCTCCCATTTAT 591
| || |||||||||||||| || ||| | ||||||||||| || || ||||| ||| ||
Sbjct 533 AAAATGCTGGTGTCATCACGATCGCAGATACTGTGTTTGGGTC-AACGCCTCCGATTAAT 591
Query 592 CCAGA-AGTTCTGGCTCAGGCATTTCAGTTAGATGTGAATGTCGTCAAAGACCTTGAGGC 650
||||| | || ||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 592 CCAGATATTT-TGGCTCAAGCTTTTCAGTTAGATGTCAATGTTGTCAAAGACCTTGAGGC 650
Query 651 CAAGTTT 657
|||||||
Sbjct 651 CAAGTTT 657
> AT5G39100.1 | Symbols: GLP6 | germin-like protein 6 | chr5:15653090-15654020
REVERSE LENGTH=835
Length=835
Score = 662 bits (358), Expect = 0.0
Identities = 536/622 (86%), Gaps = 11/622 (2%)
Strand=Plus/Plus
Query 43 TTGGTCATTCCCTTTTC-CAATGCTTATGATCCGAGTCCACTCCAAGACTTCTGTGTGGC 101
||||||||| ||||| | || ||||||||||| |||||||| ||||| |||||||||||
Sbjct 95 TTGGTCATTTCCTTTGCTGAA-GCTTATGATCCAAGTCCACTTCAAGATTTCTGTGTGGC 153
Query 102 CGTTGGTAACCTCAACAA---TGTTTTTGTGAATGGTAAGTTCTGTAAGGATCCAAAGCA 158
| ||| | ||||||| || ||||||||||||||| ||||||||||||||||| |||||
Sbjct 154 CATTGATGACCTCAAAAATGGTGTTTTTGTGAATGGAAAGTTCTGTAAGGATCCCAAGCA 213
Query 159 AGCGAAGGCGGAAGACTTCTTCTACTCAGGTCTCAACAAGGCCGGAAGCACCAATAATAA 218
||||||||| ||| | ||||||| |||||| |||||| |||| |||||||| ||||||||
Sbjct 214 AGCGAAGGCAGAATAATTCTTCTTCTCAGGCCTCAACCAGGCAGGAAGCACTAATAATAA 273
Query 219 TGTCAAATCCAACGTCACAACAGTGAATGTTGATCAGATTCCAGGGCTAAACACTATGGG 278
|||| ||||||||| |||||||| ||||| || |||||||||||| |||||||||||||
Sbjct 274 AGTCAGATCCAACGTGACAACAGTCAATGTCGACCAGATTCCAGGGTTAAACACTATGGG 333
Query 279 AATATCATTGGTTCGCATAGACTATGCGCCTTATGGCCAAAACCCGCCTCACACACACCC 338
|||||| ||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct 334 AATATCCTTGGTCCGCATAGACTATGCACCATATGGACAAAACCCGCCTCACACGCACCC 393
Query 339 GCGTGCCACTGAAATCCTTGTCCTTGTCGAGGGAACGTTATATGTTGGGTTTGTCTCTTC 398
||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 394 TCGTGCTACTGAGATCCTTGTCCTTATCGAGGGAACGTTATATGTTGGTTTTGTCTCTTC 453
Query 399 CAATCAAGACAATAACCGTCTTTTCGCCAAAATTTTGCACCCCGGTGATGTGTTCGTGTT 458
||||||||||||||||||||| ||||||||| || || |||| ||||| ||||| |||||
Sbjct 454 CAATCAAGACAATAACCGTCTATTCGCCAAAGTTCTGTACCCGGGTGACGTGTTTGTGTT 513
Query 459 CCCCATAGGGATGATTCATTTTCAAGTGAATATCGGGAAGACCCCCGCGGTTGCCTTTGC 518
|||||||| ||||| ||||||||||||||||||||||| || || ||||| ||||| ||
Sbjct 514 TCCCATAGGAATGATCCATTTTCAAGTGAATATCGGGAAAACGCCTGCGGTGGCCTTCGC 573
Query 519 CGGACTT-AGTAGTCAGAACGCTGGTGTCATCACAATTGCAAACACTGTGTTTGGTTCGA 577
||| || ||||||||||| |||||||| ||||| || || | ||||||||||| || |
Sbjct 574 TGGA-TTGAGTAGTCAGAATGCTGGTGTTATCACGATCGCTGATACTGTGTTTGGGTC-A 631
Query 578 AA-CCTCCCATTTATCCAGA-AGTTCTGGCTCAGGCATTTCAGTTAGATGTGAATGTCGT 635
| ||||| ||| ||||||| | || | ||||| |||||||| |||||||| ||| | ||
Sbjct 632 ACGCCTCCGATTAATCCAGATATTT-TAGCTCAAGCATTTCAATTAGATGTCAATATTGT 690
Query 636 CAAAGACCTTGAGGCCAAGTTT 657
| | || |||||||||||||||
Sbjct 691 CGAGGATCTTGAGGCCAAGTTT 712
> AT5G39150.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15669898-15670808 REVERSE LENGTH=795
Length=795
Score = 660 bits (357), Expect = 0.0
Identities = 526/607 (87%), Gaps = 13/607 (2%)
Strand=Plus/Plus
Query 59 CCAATGCTTATGATCCGAGTCCACTCCAAGACTTCTGTGTGGCCGTTGGT-AACCTCAAC 117
|||| || |||||||| |||||||| |||||||||||||||||| ||| | | ||| ||
Sbjct 75 CCAAAGCATATGATCCAAGTCCACTTCAAGACTTCTGTGTGGCCATTGATGACCCT-AAA 133
Query 118 AA---TGTTTTTGTGAATGGTAAGTTCTGTAAGGATCCAAAGCAAGCGAAGGCGGAAGAC 174
|| ||||||||||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct 134 AATGGTGTTTTTGTGAATGGTAAGTTTTGCAAGGATCCAAAGCAAGCAAAGGCAGAAGAT 193
Query 175 TTCTTCTACTCAGGTCTCAA-CAAGGCCGGAAGCACCAATAATAATGTCAAATCCAACGT 233
||||| | |||||| ||||| ||| || |||| ||| ||||| || ||| ||||||||||
Sbjct 194 TTCTTTTCCTCAGGCCTCAACCAA-GCAGGAATCACTAATAACAAAGTCCAATCCAACGT 252
Query 234 CACAACAGTGAATGTTGATCAGATTCCAGGGCTAAACACTATGGGAATATCATTGGTTCG 293
|||||||| ||||| ||||||||||||||| |||||||| |||||||||| ||||| ||
Sbjct 253 GACAACAGTCAATGTCGATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCG 312
Query 294 CATAGACTATGCGCCTTATGGCCAAAACCCGCCTCACACACACCCGCGTGCCACTGAAAT 353
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 313 CATAGACTATGCGCCATATGGTCAAAACCCGCCTCACACACACCCTCGTGCCACTGAGAT 372
Query 354 CCTTGTCCTTGTCGAGGGAACGTTATATGTTGGGTTTGTCTCTTCCAATCAAGACAATAA 413
|||||| ||||| || ||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct 373 CCTTGTTCTTGTTGAAGGAACATTATATGTTGGTTTTGTCTCTTCGAATCAAGACAACAA 432
Query 414 CCGTCTT-TTCGCCAAAATTTTGCACCCCGGTGATGTGTTCGTGTTCCCCATAGGGATGA 472
|||| || ||||||||| | || |||| || || |||||||||||||||||||| ||||
Sbjct 433 CCGT-TTATTCGCCAAAGTGCTGAACCCGGGAGACGTGTTCGTGTTCCCCATAGGAATGA 491
Query 473 TTCATTTTCAAGTGAATATCGGGAAGACCCCCGCGGTTGCCTTTGCCGGACTTAGTAGTC 532
| |||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||
Sbjct 492 TCCATTTTCAAGTGAATATCGGGAAGACCCCCGCAGTGGCCTTTGCTGGACTAAGTAGTC 551
Query 533 AGAACGCTGGTGTCATCACAATTGCAAACACTGTGTTTGGTTCGAAA-CCTCCCATTTAT 591
| || |||||||||||||| || ||| | || |||||||| || || ||||| ||| ||
Sbjct 552 AAAATGCTGGTGTCATCACGATCGCAGATACAGTGTTTGGATC-AACGCCTCCGATTAAT 610
Query 592 CCAGA-AGTTCTGGCTCAGGCATTTCAGTTAGATGTGAATGTCGTCAAAGACCTTGAGGC 650
||||| | || |||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 611 CCAGATATTT-TGGCTCAGGCGTTTCAGTTAGATGTCAATGTTGTCAAAGACCTTGAGGC 669
Query 651 CAAGTTT 657
|||||||
Sbjct 670 CAAGTTT 676
> AT5G39180.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15683464-15684353 REVERSE LENGTH=774
Length=774
Score = 654 bits (354), Expect = 0.0
Identities = 526/608 (87%), Gaps = 15/608 (2%)
Strand=Plus/Plus
Query 59 CCAATGCTTATGATCCGAGTCCACTCCAAGACTTCTGTGTGGCCGTTGGT-AACCTCAAC 117
|||| || |||||||| |||||||| |||||||||||||||||| ||| | | ||| ||
Sbjct 56 CCAAAGCATATGATCCAAGTCCACTTCAAGACTTCTGTGTGGCCATTGATGACCCT-AAA 114
Query 118 AA---TGTTTTTGTGAATGGTAAGTTCTGTAAGGATCCAAAGCAAGCGAAGGCGGAAGAC 174
|| ||||||||||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct 115 AATGGTGTTTTTGTGAATGGTAAGTTTTGCAAGGATCCAAAGCAAGCAAAGGCAGAAGAT 174
Query 175 TTCTTCTACTCAGGTCTCAA-CAAGGCCGGAAGCACCAATAATAATGTCAAATCCAACGT 233
||||| | |||||| ||||| ||| || |||| ||| ||||| || ||| ||||||||||
Sbjct 175 TTCTTTTCCTCAGGCCTCAACCAA-GCAGGAATCACTAATAACAAAGTCCAATCCAACGT 233
Query 234 CACAACAGTGAATGTTGATCAGATTCCAGGGCTAAACACTATGGGAATATCATTGGTTCG 293
|||||||| ||||| ||||||||||||||| |||||||| |||||||||| ||||| ||
Sbjct 234 GACAACAGTCAATGTCGATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCG 293
Query 294 CATAGACTATGCGCCTTATGGCCAAAACCCGCCTCACACACACCCGCGTGCCACTGAAAT 353
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 294 CATAGACTATGCGCCATATGGTCAAAACCCGCCTCACACACACCCTCGTGCCACTGAGAT 353
Query 354 CCTTGTCCTTGTCGAGGGAACGTTATATGTTGGGTTTGTCTCTTCCAATCAAGACAATAA 413
|||||| ||||| || ||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct 354 CCTTGTTCTTGTTGAAGGAACATTATATGTTGGTTTTGTCTCTTCGAATCAAGACAACAA 413
Query 414 CCGTCTT-TTCGCCAAAATTTTGCACCCCGGTGATGTGTTCGTGTTCCCCATAGGGATGA 472
|||| || ||||||||| | || |||| || || |||||||||||||||||||| ||||
Sbjct 414 CCGT-TTATTCGCCAAAGTGCTGAACCCGGGAGACGTGTTCGTGTTCCCCATAGGAATGA 472
Query 473 TTCATTTTCAAGTGAATATCGGGAAGACCCCCGCGGTTGCCTTTGCCGGACTTAGTAGTC 532
| |||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||
Sbjct 473 TCCATTTTCAAGTGAATATCGGGAAGACCCCCGCAGTGGCCTTTGCTGGACTAAGTAGTC 532
Query 533 AGAACGCTGGTGTCATCACAATTGCAAACACT-GTGTTTGGTTCGAAA-CCTCCCATTTA 590
| || |||||||||||||| || ||| | | | |||||||| || || ||||| ||| |
Sbjct 533 AAAATGCTGGTGTCATCACGATCGCAGATA-TAGTGTTTGGATC-AACGCCTCCGATTAA 590
Query 591 TCCAGA-AGTTCTGGCTCAGGCATTTCAGTTAGATGTGAATGTCGTCAAAGACCTTGAGG 649
|||||| | || |||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 591 TCCAGATATTT-TGGCTCAGGCGTTTCAGTTAGATGTCAATGTTGTCAAAGACCTTGAGG 649
Query 650 CCAAGTTT 657
||||||||
Sbjct 650 CCAAGTTT 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5