BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891831
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39110.1 | Symbols: | RmlC-like cupins superfamily protein ... 617 2e-176
AT5G39120.1 | Symbols: | RmlC-like cupins superfamily protein ... 584 2e-166
AT5G39150.1 | Symbols: | RmlC-like cupins superfamily protein ... 584 2e-166
AT5G39180.1 | Symbols: | RmlC-like cupins superfamily protein ... 584 2e-166
AT5G39100.1 | Symbols: GLP6 | germin-like protein 6 | chr5:1565... 571 2e-162
> AT5G39110.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15657802-15658584 REVERSE LENGTH=669
Length=669
Score = 617 bits (334), Expect = 2e-176
Identities = 417/457 (91%), Gaps = 5/457 (1%)
Strand=Plus/Plus
Query 46 GTCCACTTCAAGACTTCTGCGTGGCCATTAGTGACCTCAAAAATGGTGGTAATTTTTGTG 105
|||||||||||||||| || ||||||||| | ||||||||||||||| | ||||||||
Sbjct 77 GTCCACTTCAAGACTTTTGTGTGGCCATTGGCGACCTCAAAAATGGT-G---TTTTTGTG 132
Query 106 AATGGTAAGTTCTGCAAGTATCCGAAGCAAGCGAAGGCAAAAGATTTCTTCTACTCAGGC 165
||||||||||| |||||| |||| |||||||| |||||| |||||||||| |||||||||
Sbjct 133 AATGGTAAGTTTTGCAAGGATCCAAAGCAAGCAAAGGCAGAAGATTTCTTTTACTCAGGC 192
Query 166 CTCAACCAGGCAGGGACCACTAATAATAGAGTCAAATCCAACGTGACAACGGTCAATGTC 225
|||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 193 CTCAACCAAGCAGGAACCACTAATAATAAAGTCAAATCCAACGTGACAACAGTCAATGTC 252
Query 226 GACCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGCCT 285
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGCCA 312
Query 286 TATGGACAAAACCCACCTCACACGCACCCGCGTGCTACTGAGATCCTTGTTCTTGTCGAG 345
||||| |||||||| |||||||| ||||| ||||| |||||||||||||||||||| |||
Sbjct 313 TATGGTCAAAACCCGCCTCACACACACCCTCGTGCCACTGAGATCCTTGTTCTTGTTGAG 372
Query 346 GGAACTTTGTATGTAGGTTTTGTCTCTTCCAATCAAGACAATAACCGTTTATTCGCCAAA 405
||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 373 GGAACATTATATGTTGGTTTTGTCTCTTCCAATCAAGACAACAACCGTTTATTCGCTAAA 432
Query 406 GTGCTGAACCCCGGCGACGTGTTCGTGTTTCCTATTGGAATGATCTATTTTCAAGTGAAT 465
||||||||||| ||||||||||| ||||| || || ||||||||| ||||||||||||||
Sbjct 433 GTGCTGAACCCGGGCGACGTGTTTGTGTTCCCCATAGGAATGATCCATTTTCAAGTGAAT 492
Query 466 ATCGGAAAGACCCC-GCAGTGGCCTTTGTTGGACTAA 501
||||| |||||||| ||||||||||||| ||||||||
Sbjct 493 ATCGGGAAGACCCCTGCAGTGGCCTTTGCTGGACTAA 529
> AT5G39120.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15662705-15663486 REVERSE LENGTH=666
Length=666
Score = 584 bits (316), Expect = 2e-166
Identities = 413/459 (90%), Gaps = 9/459 (2%)
Strand=Plus/Plus
Query 46 GTCCACTTCAAGACTTCTGCGTGGCCATTAG-TGA-CCTCAAAAATGGTGGTAATTTTTG 103
||||||||||||||||||| || |||||| | ||| ||| ||||||||| | ||||||
Sbjct 74 GTCCACTTCAAGACTTCTGTGTTGCCATT-GATGACCCT-AAAAATGGT-G---TTTTTG 127
Query 104 TGAATGGTAAGTTCTGCAAGTATCCGAAGCAAGCGAAGGCAAAAGATTTCTTCTACTCAG 163
||||||||||||| |||||| |||| |||||||| |||||| |||||||||| | |||||
Sbjct 128 TGAATGGTAAGTTTTGCAAGGATCCAAAGCAAGCAAAGGCAGAAGATTTCTTTTCCTCAG 187
Query 164 GCCTCAACCAGGCAGGGACCACTAATAATAGAGTCAAATCCAACGTGACAACGGTCAATG 223
|||||||||| ||||| | ||||||||| | ||||||||||||||||||||| |||||||
Sbjct 188 GCCTCAACCAAGCAGGAATCACTAATAACAAAGTCAAATCCAACGTGACAACAGTCAATG 247
Query 224 TCGACCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGC 283
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TCGATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGC 307
Query 284 CTTATGGACAAAACCCACCTCACACGCACCCGCGTGCTACTGAGATCCTTGTTCTTGTCG 343
| ||||| |||||||| |||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 308 CATATGGTCAAAACCCGCCTCACACACACCCTCGTGCCACTGAGATCCTTGTTCTTGTTG 367
Query 344 AGGGAACTTTGTATGTAGGTTTTGTCTCTTCCAATCAAGACAATAACCGTTTATTCGCCA 403
| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 368 AAGGAACGTTATATGTTGGTTTTGTCTCTTCGAATCAAGACAACAACCGTTTATTCGCCA 427
Query 404 AAGTGCTGAACCCCGGCGACGTGTTCGTGTTTCCTATTGGAATGATCTATTTTCAAGTGA 463
||||||||||||| || |||||||||||||| || || ||||||||| ||||||||||||
Sbjct 428 AAGTGCTGAACCCGGGAGACGTGTTCGTGTTCCCCATAGGAATGATCCATTTTCAAGTGA 487
Query 464 ATATCGGAAAGACCCC-GCAGTGGCCTTTGTTGGACTAA 501
||||||| |||||||| ||||||||||||| ||||||||
Sbjct 488 ATATCGGGAAGACCCCCGCAGTGGCCTTTGCTGGACTAA 526
> AT5G39150.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15669898-15670808 REVERSE LENGTH=795
Length=795
Score = 584 bits (316), Expect = 2e-166
Identities = 413/459 (90%), Gaps = 9/459 (2%)
Strand=Plus/Plus
Query 46 GTCCACTTCAAGACTTCTGCGTGGCCATTAG-TGA-CCTCAAAAATGGTGGTAATTTTTG 103
||||||||||||||||||| ||||||||| | ||| ||| ||||||||| | ||||||
Sbjct 93 GTCCACTTCAAGACTTCTGTGTGGCCATT-GATGACCCT-AAAAATGGT-G---TTTTTG 146
Query 104 TGAATGGTAAGTTCTGCAAGTATCCGAAGCAAGCGAAGGCAAAAGATTTCTTCTACTCAG 163
||||||||||||| |||||| |||| |||||||| |||||| |||||||||| | |||||
Sbjct 147 TGAATGGTAAGTTTTGCAAGGATCCAAAGCAAGCAAAGGCAGAAGATTTCTTTTCCTCAG 206
Query 164 GCCTCAACCAGGCAGGGACCACTAATAATAGAGTCAAATCCAACGTGACAACGGTCAATG 223
|||||||||| ||||| | ||||||||| | |||| |||||||||||||||| |||||||
Sbjct 207 GCCTCAACCAAGCAGGAATCACTAATAACAAAGTCCAATCCAACGTGACAACAGTCAATG 266
Query 224 TCGACCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGC 283
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 TCGATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGC 326
Query 284 CTTATGGACAAAACCCACCTCACACGCACCCGCGTGCTACTGAGATCCTTGTTCTTGTCG 343
| ||||| |||||||| |||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 327 CATATGGTCAAAACCCGCCTCACACACACCCTCGTGCCACTGAGATCCTTGTTCTTGTTG 386
Query 344 AGGGAACTTTGTATGTAGGTTTTGTCTCTTCCAATCAAGACAATAACCGTTTATTCGCCA 403
| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 387 AAGGAACATTATATGTTGGTTTTGTCTCTTCGAATCAAGACAACAACCGTTTATTCGCCA 446
Query 404 AAGTGCTGAACCCCGGCGACGTGTTCGTGTTTCCTATTGGAATGATCTATTTTCAAGTGA 463
||||||||||||| || |||||||||||||| || || ||||||||| ||||||||||||
Sbjct 447 AAGTGCTGAACCCGGGAGACGTGTTCGTGTTCCCCATAGGAATGATCCATTTTCAAGTGA 506
Query 464 ATATCGGAAAGACCCC-GCAGTGGCCTTTGTTGGACTAA 501
||||||| |||||||| ||||||||||||| ||||||||
Sbjct 507 ATATCGGGAAGACCCCCGCAGTGGCCTTTGCTGGACTAA 545
> AT5G39180.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15683464-15684353 REVERSE LENGTH=774
Length=774
Score = 584 bits (316), Expect = 2e-166
Identities = 413/459 (90%), Gaps = 9/459 (2%)
Strand=Plus/Plus
Query 46 GTCCACTTCAAGACTTCTGCGTGGCCATTAG-TGA-CCTCAAAAATGGTGGTAATTTTTG 103
||||||||||||||||||| ||||||||| | ||| ||| ||||||||| | ||||||
Sbjct 74 GTCCACTTCAAGACTTCTGTGTGGCCATT-GATGACCCT-AAAAATGGT-G---TTTTTG 127
Query 104 TGAATGGTAAGTTCTGCAAGTATCCGAAGCAAGCGAAGGCAAAAGATTTCTTCTACTCAG 163
||||||||||||| |||||| |||| |||||||| |||||| |||||||||| | |||||
Sbjct 128 TGAATGGTAAGTTTTGCAAGGATCCAAAGCAAGCAAAGGCAGAAGATTTCTTTTCCTCAG 187
Query 164 GCCTCAACCAGGCAGGGACCACTAATAATAGAGTCAAATCCAACGTGACAACGGTCAATG 223
|||||||||| ||||| | ||||||||| | |||| |||||||||||||||| |||||||
Sbjct 188 GCCTCAACCAAGCAGGAATCACTAATAACAAAGTCCAATCCAACGTGACAACAGTCAATG 247
Query 224 TCGACCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGC 283
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TCGATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGC 307
Query 284 CTTATGGACAAAACCCACCTCACACGCACCCGCGTGCTACTGAGATCCTTGTTCTTGTCG 343
| ||||| |||||||| |||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 308 CATATGGTCAAAACCCGCCTCACACACACCCTCGTGCCACTGAGATCCTTGTTCTTGTTG 367
Query 344 AGGGAACTTTGTATGTAGGTTTTGTCTCTTCCAATCAAGACAATAACCGTTTATTCGCCA 403
| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 368 AAGGAACATTATATGTTGGTTTTGTCTCTTCGAATCAAGACAACAACCGTTTATTCGCCA 427
Query 404 AAGTGCTGAACCCCGGCGACGTGTTCGTGTTTCCTATTGGAATGATCTATTTTCAAGTGA 463
||||||||||||| || |||||||||||||| || || ||||||||| ||||||||||||
Sbjct 428 AAGTGCTGAACCCGGGAGACGTGTTCGTGTTCCCCATAGGAATGATCCATTTTCAAGTGA 487
Query 464 ATATCGGAAAGACCCC-GCAGTGGCCTTTGTTGGACTAA 501
||||||| |||||||| ||||||||||||| ||||||||
Sbjct 488 ATATCGGGAAGACCCCCGCAGTGGCCTTTGCTGGACTAA 526
> AT5G39100.1 | Symbols: GLP6 | germin-like protein 6 | chr5:15653090-15654020
REVERSE LENGTH=835
Length=835
Score = 571 bits (309), Expect = 2e-162
Identities = 408/455 (90%), Gaps = 9/455 (2%)
Strand=Plus/Plus
Query 46 GTCCACTTCAAGACTTCTGCGTGGCCATTAG-TGACCTCAAAAATGGTGGTAATTTTTGT 104
||||||||||||| ||||| ||||||||| | |||||||||||||||| | |||||||
Sbjct 129 GTCCACTTCAAGATTTCTGTGTGGCCATT-GATGACCTCAAAAATGGT-G---TTTTTGT 183
Query 105 GAATGGTAAGTTCTGCAAGTATCCGAAGCAAGCGAAGGCAAAAGATTTCTTCTACTCAGG 164
|||||| |||||||| ||| |||| ||||||||||||||| || | ||||||| ||||||
Sbjct 184 GAATGGAAAGTTCTGTAAGGATCCCAAGCAAGCGAAGGCAGAATAATTCTTCTTCTCAGG 243
Query 165 CCTCAACCAGGCAGGGACCACTAATAATAGAGTCAAATCCAACGTGACAACGGTCAATGT 224
||||||||||||||| | ||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 244 CCTCAACCAGGCAGGAAGCACTAATAATAAAGTCAGATCCAACGTGACAACAGTCAATGT 303
Query 225 CGACCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGCC 284
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 304 CGACCAGATTCCAGGGTTAAACACTATGGGAATATCCTTGGTCCGCATAGACTATGCACC 363
Query 285 TTATGGACAAAACCCACCTCACACGCACCCGCGTGCTACTGAGATCCTTGTTCTTGTCGA 344
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 364 ATATGGACAAAACCCGCCTCACACGCACCCTCGTGCTACTGAGATCCTTGTCCTTATCGA 423
Query 345 GGGAACTTTGTATGTAGGTTTTGTCTCTTCCAATCAAGACAATAACCGTTTATTCGCCAA 404
|||||| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 424 GGGAACGTTATATGTTGGTTTTGTCTCTTCCAATCAAGACAATAACCGTCTATTCGCCAA 483
Query 405 AGTGCTGAACCCCGGCGACGTGTTCGTGTTTCCTATTGGAATGATCTATTTTCAAGTGAA 464
||| ||| |||| || |||||||| |||||||| || ||||||||| |||||||||||||
Sbjct 484 AGTTCTGTACCCGGGTGACGTGTTTGTGTTTCCCATAGGAATGATCCATTTTCAAGTGAA 543
Query 465 TATCGG-AAAGACCCC-GCAGTGGCCTTTGTTGGA 497
|||||| ||| || || || |||||||| | ||||
Sbjct 544 TATCGGGAAA-ACGCCTGCGGTGGCCTTCGCTGGA 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5