BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891837
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39080.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1125 0.0
AT5G39050.1 | Symbols: | HXXXD-type acyl-transferase family pr... 219 7e-56
> AT5G39080.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:15641658-15643161 FORWARD LENGTH=1504
Length=1504
Score = 1125 bits (609), Expect = 0.0
Identities = 797/887 (90%), Gaps = 15/887 (2%)
Strand=Plus/Plus
Query 370 ATGGAAAAACGACAACCATGTTTCTCAAATCTTGGGCACAC-TCATGTTAAACATCAAGA 428
||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||||||||||
Sbjct 526 ATGGAAAAACGACAACCATGTTTCTCAAATCCTGGGCTCACAT-ATG-TAAACATCAAGA 583
Query 429 TTCTTCTCTACCGCAGGATTTAATCCCAAATTACAATCGTACGGTCATAAAAAGTCCAAC 488
|| |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||
Sbjct 584 TTTTTCTCTACCGCAGGATTTAATCCCAACTTACGATCGTACGGTCATTAAAAGTCCAAC 643
Query 489 GGATAGTGAAAACAAAGTGTTGAATGAGTGGCACTCTTT-AGCCAAAATGTTAGCGGGTG 547
|||||||||||||||||| ||||||||||||| |||||| | ||||||| ||||| ||||
Sbjct 644 GGATAGTGAAAACAAAGTTTTGAATGAGTGGCGCTCTTTCA-CCAAAATATTAGCTGGTG 702
Query 548 GTAAAGAACCTGAGAACCCCAAGAGTTTAAAGCTTAAACCGTCATTTGAGATTGGTCCTG 607
|||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 703 GTAAAGAACCTGCCAACCCCAAGAGTTTAAAGCTTAATCCATCATTTGAGATTGGTCCTG 762
Query 608 ACGTTGTCCGGTACACTCTCGAGCTCACTCGTGAAGATATCCAAACGTTTCACGAGAGAC 667
|||||||||| ||||||||| ||||||| |||||||||||||||||| ||| ||||||||
Sbjct 763 ACGTTGTCCGATACACTCTCCAGCTCACGCGTGAAGATATCCAAACGCTTCGCGAGAGAC 822
Query 668 TTAAGAGAGAA-TTT--T-CT--TCCTCCTCACCCTCACCCTCAAAGGACCTTCGCTTGT 721
||||||||||| ||| | || ||||||||| ||||| ||||||| || ||||||||||
Sbjct 823 TTAAGAGAGAAGTTTCCTCCTCCTCCTCCTCAACCTCATCCTCAAAAGAGCTTCGCTTGT 882
Query 722 CTACATTTGTTATTGTTTACTCATACGCGTTAGTGTGCTTAATAAGAGCTCGAGGCGGAG 781
|||||||||||||||||||||| || | ||||| ||| ||||||||||||||||||| |
Sbjct 883 CTACATTTGTTATTGTTTACTCGTATGTATTAGTATGCATAATAAGAGCTCGAGGCGGGG 942
Query 782 AACCGA-ATAGACCGGTTGGATATGCATTTTCGGTAGATTGTCGAAGCCTCATCAATCCA 840
|||| | ||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 943 AACC-ACATAGACCGGTTGGATATGCGTTTTCGGTGGATTGTCGAAGCCTCATGAATCCG 1001
Query 841 CCCACCCCAAGTTATTTTGGAAATTGTATCTCTGGTTGCT-TGAGAATGATGTTGAAGGC 899
|| || |||| ||||||||||||||| ||| ||||||||| | ||||||||| ||| |||
Sbjct 1002 CCGACTCCAAATTATTTTGGAAATTGCATCGCTGGTTGCTCT-AGAATGATGCTGACGGC 1060
Query 900 AAAAACGTTTATGGGTGAAGAAGGGCTTTTGGCTGCTGCGAAAATGGTCAGCGATTCGAT 959
||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1061 AAAAATGTTTATGGGTGAAGAAGGACTTTTGGCTGCTGCGACAATGGTCAGCGATTCGAT 1120
Query 960 CGAGGAATGGGACGAGAGTTTGGCATGGAAGATTTCGGATTTCCTAGCATTTGCAACTCT 1019
||| ||||||||||||||||| || ||||||||| ||||||| |||||| |||||||||
Sbjct 1121 CGAAGAATGGGACGAGAGTTTTGCGTGGAAGATTCCGGATTTTGTAGCATATGCAACTCT 1180
Query 1020 TCCACCAGGGACACAAATTATTTTAGCTTCCTGGTCTACCCGATTTGGAGTATACGGGTT 1079
|||||||| ||||||| ||||||||| ||| |||||| ||||||||||||||||| |||
Sbjct 1181 TCCACCAGAGACACAACTTATTTTAGTTTCAGGGTCTAACCGATTTGGAGTATACGAGTT 1240
Query 1080 GGATTTTGGATGGGGCAGACCGGATAAAGTGGTGATTGTGTCGATCAGTCAAGGCAATGG 1139
||||||||| ||||| ||||| ||||||||| || ||||||||||||||| |||||||||
Sbjct 1241 GGATTTTGGGTGGGGTAGACCTGATAAAGTGATGGTTGTGTCGATCAGTCCAGGCAATGG 1300
Query 1140 GATTTCCATGGCTGATAGTAGAGACCAAATCGGCGGTGTGGAGATTGGCTTCTCACTCAA 1199
|||||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1301 GATTTCCATGGCGGAAAGTAGAGACCAAAACGGCAGTGTGGAGATTGGCTTCTCACTCAA 1360
Query 1200 GAAACAAGAAATGGACACACTGATTGATTTGCTCCAATATGATCTAA 1246
||| || |||||||||||| ||||||||||||| || | ||| ||||
Sbjct 1361 GAAGCACGAAATGGACACATTGATTGATTTGCTTCATTGTGAACTAA 1407
> AT5G39050.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:15634586-15636065 FORWARD LENGTH=1480
Length=1480
Score = 219 bits (118), Expect = 7e-56
Identities = 163/185 (88%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCATCACTTAACA-TCATCGACGTGGCACAAGTCACTCCTTCAAACTCTGACTC 59
||||| ||||||||||| | ||||||||||||||| |||||| || |||||||| |||||
Sbjct 26 ATGGAGTCATCACTTAA-AGTCATCGACGTGGCACGAGTCACACCATCAAACTCCGACTC 84
Query 60 GGCGGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTTATTTATTTCAAACTTCGCGC 119
| | ||||||||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct 85 GTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGGTACAAACTTCACGC 144
Query 120 TGTCGAACGAGTCATCTTCTACAGACTCACTGACGCAACTCGCCCTTTCTTCGACTCAGT 179
|||||||||||||||||||||| |||||| ||||||| ||| |||||||| ||||||||
Sbjct 145 CGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCGTCCTTTCTTTGACTCAGT 204
Query 180 CATCG 184
|||||
Sbjct 205 CATCG 209
Score = 200 bits (108), Expect = 3e-50
Identities = 163/189 (86%), Gaps = 6/189 (3%)
Strand=Plus/Plus
Query 184 GAACCTCTTGATCTCAAACC-AAGCATCGTCTATTCCCAAAACGACGCCGTTTCATTCAC 242
||||| ||||||| |||||| || |||||||| ||| |||||||||||||||||||||
Sbjct 281 GAACCACTTGATCCCAAACCGAA-AATCGTCTACACCCCAAACGACGCCGTTTCATTCAC 339
Query 243 TGTCGCCGAGACAAACGCTGAGTTCTCTCGTTTATCCGGCAACA-AACCATTCCCCTCCA 301
||||||||| ||||||| || ||||| |||||| ||||||| | |||| |||||| |||
Sbjct 340 CGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACCGGCAA-AGAACCGTTCCCCACCA 398
Query 302 CCGAGTTATACCCGTTAGTCCCCGAGTTAC-TCAGCTCCGACGACTCAGCCTCCGTTGTG 360
|||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||
Sbjct 399 CCGAGTTATACCCGTTAGTCCCCGAGTTACATGT-CTCCGACGACTCAGCTTCCGCCGTG 457
Query 361 TCGTTCCAA 369
||||| |||
Sbjct 458 TCGTTTCAA 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5