BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891850 Length=672 Score E Sequences producing significant alignments: (Bits) Value AT5G38940.1 | Symbols: | RmlC-like cupins superfamily protein ... 992 0.0 AT5G38930.1 | Symbols: | RmlC-like cupins superfamily protein ... 981 0.0 AT5G38910.1 | Symbols: | RmlC-like cupins superfamily protein ... 632 1e-180 AT5G38960.1 | Symbols: | RmlC-like cupins superfamily protein ... 505 3e-142 AT4G14630.1 | Symbols: GLP9 | germin-like protein 9 | chr4:8392... 433 1e-120 AT1G09560.1 | Symbols: GLP5 | germin-like protein 5 | chr1:3093... 65.8 5e-10 > AT5G38940.1 | Symbols: | RmlC-like cupins superfamily protein | chr5:15588757-15589666 FORWARD LENGTH=826 Length=826 Score = 992 bits (537), Expect = 0.0 Identities = 629/674 (93%), Gaps = 4/674 (1%) Strand=Plus/Plus Query 1 ATGGCGATGAAGAGTCTCCCATTTCTAGTAGTTCTATCTCTCCTGGCTATAACACTTCCA 60 ||||| |||||||||||| ||||||| | ||| || |||||| ||||| ||||||||||| Sbjct 15 ATGGCAATGAAGAGTCTCTCATTTCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCA 74 Query 61 TTAGCCATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 120 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 75 TTAGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 134 Query 121 G-CAGATGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAA-CTCGTCACAGCAG 178 | || |||| |||||||||||||||||||||||||||||||| ||| || |||||||||| Sbjct 135 GCCA-ATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCC-AAAGCTGGTCACAGCAG 192 Query 179 ATGACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACCGGTAACTAGTCCAGTTGGGTCGA 238 ||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||| Sbjct 193 ATGACTTCTTTTTCTCAGGGCTTCAAACTGCAAGACCCATTACTAGTCCCGTTGGGTCGA 252 Query 239 CCGTGACAGCCGTCAATGTTAACAACCTTCTAGGGTTAAACACTCTTGGAATCTCCCTTG 298 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 253 CCGTGACAGCCGTCAATGTTAACAACCTTCTTGGATTAAACACTCTTGGAATCTCCCTTG 312 Query 299 TCCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGG 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 313 TCCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACAG 372 Query 359 AGATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373 AGATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATA 432 Query 419 ATCGCCTCTTCACTAAAGTTCTTAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCA 478 ||||||| ||| | |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 433 ATCGCCTATTCTCAAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCCGAGGGACTCA 492 Query 479 TCCATTTCCAAGCAAACATTGGCAAGGAACCAGCGGTTGCATTCGCCGCTCTAAGCAGCC 538 ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 493 TCCATTTTCAAGCAAACATTGGCAAGGCACCAGCGGTTGCATTCGCCGCTCTAAGCAGCC 552 Query 539 AAAACCCTGGTGTCATCACTATTGCTAACACAGTGTTTGGGTCTAACCCAGCGATTAACC 598 ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| || |||| Sbjct 553 AAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCCATAAACC 612 Query 599 CAAGTATTCTTGCAAGGGCGTTCCAGTTGGACCCTAGGATTGTCGTGGATCTACAGAACA 658 ||| ||||||||||| ||| ||||||||| |||| ||| ||||| |||||||||||| || Sbjct 613 CAACTATTCTTGCAAAGGCATTCCAGTTGAACCCAAGGGTTGTCATGGATCTACAGACCA 672 Query 659 AGTTCAAAAAATAA 672 ||||||| |||||| Sbjct 673 AGTTCAAGAAATAA 686 > AT5G38930.1 | Symbols: | RmlC-like cupins superfamily protein | chr5:15585073-15585841 FORWARD LENGTH=672 Length=672 Score = 981 bits (531), Expect = 0.0 Identities = 628/675 (93%), Gaps = 6/675 (1%) Strand=Plus/Plus Query 1 ATGGCGATGAAGAGTCTCCCATTTCTAGTAGTTCTATCTCTCCTGGCTATAACACTTCCA 60 ||||| |||||||||||| ||||||| | || |||||||||| ||||| ||||||||||| Sbjct 1 ATGGCAATGAAGAGTCTCTCATTTCTTGCAGCTCTATCTCTCTTGGCTTTAACACTTCCA 60 Query 61 TTAGCCATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 120 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 61 TTAACCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACAGCTCA 120 Query 121 GCAGATGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAA-CTCGTCACAGCAGA 179 ||| |||| |||||||||||||||||||||||||||||||| ||| || ||||||||||| Sbjct 121 GCAAATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCC-AAAGCTGGTCACAGCAGA 179 Query 180 TGACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACCGGTAACTAGTCCAGTTGGGTCGAC 239 ||||||||||||| |||||||||||| ||||||||| |||| ||||| ||||||||||| Sbjct 180 TGACTTCTTTTTCCCAGGGCTTCAAACTGCAAGACCCATAACAAGTCCTGTTGGGTCGAC 239 Query 240 CGTGACAGCCGTCAATGTTAACAACCTTCTAGGGTTAAACACTCTTGGAATCTCCCTTGT 299 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 240 CGTGACAGCCGTCAATGTTAACAACCTTCTTGGGTTAAACACTCTTGGAATCTCCCTTGT 299 Query 300 CCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGA 359 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 300 CCGTATTGATTATGCGGTTGACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGA 359 Query 360 GATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAA 419 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| Sbjct 360 GATCTTGGTTGTCGAACTAGGAACACTTCTCGTAGGGTTTGTTACATCAAACCCCGATAA 419 Query 420 TCGCCTCTTCACTAAAGTTCTTAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCAT 479 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 TCGCCTATTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCAT 479 Query 480 CCATTTCCAAGCAAACATTGGCAAGGAACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCA 539 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 480 CCATTTTCAAGCAAACATTGGCAAGGCACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCA 539 Query 540 AAACCCTGGTGTCATCACTATTGCTAACA-CAGTGTTTGGGTCTAACCCAGCGATTAACC 598 |||||||||||||||||||||||| | || | ||||||||| |||||||||| || |||| Sbjct 540 AAACCCTGGTGTCATCACTATTGC-ACCAACCGTGTTTGGGGCTAACCCAGCCATCAACC 598 Query 599 CAAGTATTCTTGCAAGGGCGTTCCAG-TTGGACCCTAGGATTGTCGTGGATCTACAGAAC 657 ||| ||||||||||| |||||||||| ||| |||| ||| ||||| |||||||||||| | Sbjct 599 CAAATATTCTTGCAAAGGCGTTCCAGGTTG-ACCCAAGGGTTGTCATGGATCTACAGACC 657 Query 658 AAGTTCAAAAAATAA 672 |||||||| |||||| Sbjct 658 AAGTTCAAGAAATAA 672 > AT5G38910.1 | Symbols: | RmlC-like cupins superfamily protein | chr5:15578811-15579584 FORWARD LENGTH=669 Length=669 Score = 632 bits (342), Expect = 1e-180 Identities = 566/673 (84%), Gaps = 20/673 (3%) Strand=Plus/Plus Query 7 ATGAAGAGTCTCCCATTTCTAGTAGTTCTATCTCTCCTGGCTATAACACTTCCATT-AGC 65 ||||| ||| || ||||||| | |||| ||||| || |||| ||||||||| |||| || Sbjct 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAG- 59 Query 66 CATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGCCAACACCTCAGCAGA 125 || ||||| || |||||| ||||||| |||||||| || | | ||||||| ||||||| Sbjct 60 CAAGGCTTCGGACCCAAGCTCTCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAGA 119 Query 126 TGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAACTCGTCACAGCAGATGACTT 185 ||| |||||||| || ||||||||||||||||||||||| |||||||||| ||| ||||| Sbjct 120 TGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACTT 179 Query 186 CTTTTTCT-CAGGGCTTCAAAATGCAAGACCGGTAACTAGTCC---AGTTGGGTCGACCG 241 |||||| | ||||||| || | |||||||| | ||| ||| | |||||| | || Sbjct 180 CTTTTT-TACAGGGCTCCACGAGGCAAGACC---ACCTAATCCAAAAACTGGGTCTAACG 235 Query 242 TGACAGCCGTCAATGTTAACAACCTTCTAGGGTTAAACACTCTTGGAATCTCCCTTGTCC 301 | ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| Sbjct 236 TAACAGCCGTCAATGTTAACAACCTACCAGGGTTAAACACTCTTGGAATCTCACTTGTCC 295 Query 302 GTATTGATTATGCG-GTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGAG 360 |||| || |||| | ||| ||||||||||||||||||||||||||||||||||| | ||| Sbjct 296 GTATCGACTATG-GAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCGAG 354 Query 361 ATCTTGGT-TGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAA 419 ||||| | ||||| ||||||||| |||| ||||||||||| |||||||| || || Sbjct 355 GTCTTG-TATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAAAA 413 Query 420 TCGCCTCTTCACTAAAGTTCTTAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCAT 479 |||||| |||| |||| ||| ||||||||||||| |||||||||||| |||||||||| Sbjct 414 TCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTCAT 473 Query 480 CCATTTCCAAGCAAACATTGGCAAGGAACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCA 539 |||||||||| ||| |||| || | || |||||||||||||| | ||| |||||||| Sbjct 474 TCATTTCCAAGTGAACGTTGGAAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAGCCA 533 Query 540 AAACCCTGGTGTCATCACTATTGCTAACACAGTGTTTGGGTCTAACCCAGC-GATTA-AC 597 ||||||||||||||||||||||||| |||| |||||||||||||||||| | ||| | || Sbjct 534 AAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCA-CAGAT-AGAC 591 Query 598 CCAAGTATTCTTGCAAGGGCGTTCCAG-TTGGACCCTAGGATTGTCGTGGATCTACAGAA 656 |||||| |||||||||| || |||||| ||| |||||| ||||||| |||||||||||| Sbjct 592 CCAAGTTTTCTTGCAAGTGCATTCCAGGTTG-ACCCTAAGATTGTCATGGATCTACAGAC 650 Query 657 CAAGTTCAAAAAA 669 |||||||| |||| Sbjct 651 CAAGTTCATAAAA 663 > AT5G38960.1 | Symbols: | RmlC-like cupins superfamily protein | chr5:15592992-15593783 FORWARD LENGTH=666 Length=666 Score = 505 bits (273), Expect = 3e-142 Identities = 492/596 (83%), Gaps = 21/596 (4%) Strand=Plus/Plus Query 51 AACACTTCCATTAGCCATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGC 110 |||||||||||| ||||||||||| || |||||||| ||||||||||||||| || | | Sbjct 45 AACACTTCCATTTGCCATTGCTTCGGACCCAAGCCCCCTTCAAGACTTTTGTATCGGTGT 104 Query 111 CAACACCTCAGC-AGATGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAACTCG 169 ||||||| |||| | ||| | ||||| || ||||| ||||||||||||||||| || | Sbjct 105 CAACACCCCAGCTA-ATGCTCTGTTTGTGAACGGAAAATTCTGCAAGGACCCGAAGCTTG 163 Query 170 TCACAGCAGATGACTTCTTTTTCTCAGGGCTTCAAAATGCAAG-AC--CGGTAA-CTAGT 225 |||||||||||||||||| ||||||||||||| | || ||||| || | | || ||||| Sbjct 164 TCACAGCAGATGACTTCTATTTCTCAGGGCTTGACAAGGCAAGAACTACTG-AATCTAGT 222 Query 226 CCAGTTGGGTCGACCGTGACAGCCGTCAATGTTAA-CAACCTTCTAGGGTTAAACACTCT 284 ||||||||||| | ||||||| |||| |||||||| | | ||| |||||||||||| || Sbjct 223 CCAGTTGGGTCTAACGTGACAACCGTGAATGTTAATC-AGATTCCAGGGTTAAACACCCT 281 Query 285 TGGAATCTCCCTTGTCCGTATTGATTATGCG-GTTAACGGACAGAACCCACCTCACACCC 343 ||||||||| ||||||||||||||||||| | |||| ||||| ||||| |||||||| | Sbjct 282 TGGAATCTCACTTGTCCGTATTGATTATG-GAATTAATGGACAAAACCCGCCTCACACGC 340 Query 344 ACCCACGTGCCACGGAGATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCA 403 | ||||| || || ||||||||| ||||| || ||||||| ||| |||| || ||| || Sbjct 341 ATCCACGCGCTACCGAGATCTTGCTTGTCCAAGAAGGAACTCTTTTCGTTGGTTTTTTCT 400 Query 404 CATCAAACCCGGATAATCGCCTCTTC-ACTAAAGTTCTTAAC-GAGGGTGATGTATTTGT 461 ||||| ||| || |||||||| ||| || ||| || ||| |||| ||||||||||| Sbjct 401 CATCATTCCCCGAAAATCGCCTATTCAAC-AAAACGCTCAACAAAGGG-GATGTATTTGT 458 Query 462 GTTTCCAGAGGGACTCATCCATTTCCAAGCAAACATTGGCAAGGAACCAGCGGTTGCATT 521 |||||||||||||||||| |||||||||| |||||||| || |||| || |||||||| Sbjct 459 GTTTCCAGAGGGACTCATTCATTTCCAAGTGAACATTGGAAAACAACCCGCTGTTGCATT 518 Query 522 CGCCGCTCTAAGCAGCCAAAACCCTGGTGTCATCACTATTGCTAACACAGTGTTTGGGTC 581 ||| ||||||| |||||||||||||||||||||| ||| | |||||| |||||||||| Sbjct 519 CGCTTCTCTAAGTAGCCAAAACCCTGGTGTCATCATTATCGGTAACACCTTGTTTGGGTC 578 Query 582 TAACCCAGCG-ATTA-ACCC-AAGTATTCTTGCAAGGGCGTTCCAGTTGGACCCTA 634 ||| || || || | |||| || | ||||||||| ||| || |||||||| |||| Sbjct 579 TAAACC-GCCTAT-AGACCCGAA-TGTTCTTGCAAAGGCATTTCAGTTGGATCCTA 631 > AT4G14630.1 | Symbols: GLP9 | germin-like protein 9 | chr4:8392841-8393813 FORWARD LENGTH=881 Length=881 Score = 433 bits (234), Expect = 1e-120 Identities = 515/645 (80%), Gaps = 41/645 (6%) Strand=Plus/Plus Query 1 ATGGCGATGAAGAGTCTCCCATTTCTAGTAGTTCTATCTCTCCTGGCTATAACACTTCCA 60 ||| |||| || |||||| | ||||| | | |||||||||| | ||| | ||||||||| Sbjct 80 ATGACGATAAAAAGTCTCTCTTTTCTTGCGGCTCTATCTCTCTTTGCTTTGACACTTCCA 139 Query 61 TTAGCCATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGCCAACAC-CTC 119 |||| |||||||| ||||||||||| ||||||||||||||||| | | |||||| | | Sbjct 140 TTAGTAATTGCTTCCGATCCAAGCCCCCTTCAAGACTTTTGTGTTGGTGTCAACACAC-C 198 Query 120 AGCAGATGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAA--ACTCG-TCACAGC 176 ||||||||| || ||||| ||||||||||| |||||||| || || | | | | | || Sbjct 199 AGCAGATGGCGTGTTTGTGAATGGAAAGTTTTGCAAGGATCC-AAGGA-TAGTTTTC-GC 255 Query 177 AGATGACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACC-GG-TA-ACTAGT--C-CAGT 230 ||||| ||||||||||| | || || || | ||||| || | || | | | | || Sbjct 256 GGATGATTTCTTTTTCTC-GAGCCTC--AA--C-AGACCTGGAAATACAAATAACGCGGT 309 Query 231 TGGGTCGACCGTGACAGCCGTCAATGTTAACAACCTTCTAGGGTTAAACACTCTTGGAAT 290 |||||| | ||||||| |||||||||||||||||||| ||| ||||||||||||| || Sbjct 310 TGGGTCCAACGTGACAACCGTCAATGTTAACAACCTTGGAGGACTAAACACTCTTGGTAT 369 Query 291 CTCCCTTGTCCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACG 350 ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||| Sbjct 370 CTCACTTGTTCGTATAGACTATGCACCCAACGGTCAGAACCCACCTCACACCCACCCACG 429 Query 351 TGCCACGGAGATCTTGGTTGT-CGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAA 409 |||||| |||||||||||||| | |||||||||| || || ||||||||| || |||||| Sbjct 430 TGCCACCGAGATCTTGGTTGTTC-AACAAGGAACTCTACTTGTAGGGTTTATCTCATCAA 488 Query 410 ACC----CGGATAATCGCCTCTTCACTAAAGTTCTTAACGAGGGTGATGTATTTGTGTTT 465 ||| |||| || || || ||| | ||| || |||| |||||| |||||||||||| Sbjct 489 ACCAAGACGGA-AACCGTCTTTTCGCCAAAACACTCAACGTGGGTGACGTATTTGTGTTT 547 Query 466 CCAGAGGGACTCATCCATTTCCAAG--CAAACATTGGCAAGGAAC-C-AGCGGTTGCATT 521 ||||| ||||||||||||||||| | ||| | | || | ||||| | ||| |||||| | Sbjct 548 CCAGAAGGACTCATCCATTTCCA-GTTCAACC-TAGG-A-GGAACTCCAGCAGTTGCAAT 603 Query 522 CGCCGCTCTAAGCAGCCAAAACCCTGGTGTCATCACTATTGCTAACACAGTGTTTGGGTC 581 ||| ||| | |||||||||||| | ||||| ||||| |||||||||||| | |||||||| Sbjct 604 CGCTGCTTTGAGCAGCCAAAACGCAGGTGTTATCACAATTGCTAACACAATATTTGGGTC 663 Query 582 TAACCCAGCGAT-TA-ACCC-AAGTATTCTTGCAAGGGCGTTCCA 623 ||| |||| || || |||| || | |||||||||| || ||||| Sbjct 664 TAAACCAG--ATGTAGACCCGAA-TGTTCTTGCAAGAGCATTCCA 705 > AT1G09560.1 | Symbols: GLP5 | germin-like protein 5 | chr1:3093839-3094864 FORWARD LENGTH=942 Length=942 Score = 65.8 bits (35), Expect = 5e-10 Identities = 66/80 (83%), Gaps = 6/80 (8%) Strand=Plus/Plus Query 328 AACCCACCTCACACCCACCCACGTGCCACGGAGATC-TTGGTT-GTCGAAC-AAGGAACA 384 ||||||||||||||||||||||||||||| ||| || || || ||| | |||||||| Sbjct 373 AACCCACCTCACACCCACCCACGTGCCACTGAGGTCGTT--TTCGTCCT-CGAAGGAACA 429 Query 385 CTTCTCGTAGGGTTTGTCAC 404 ||| ||| |||||| |||| Sbjct 430 CTTGACGTTGGGTTTCTCAC 449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32501493109 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5