BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891851
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38910.1 | Symbols: | RmlC-like cupins superfamily protein ... 754 0.0
AT5G38960.1 | Symbols: | RmlC-like cupins superfamily protein ... 501 3e-141
> AT5G38910.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15578811-15579584 FORWARD LENGTH=669
Length=669
Score = 754 bits (408), Expect = 0.0
Identities = 586/671 (87%), Gaps = 16/671 (2%)
Strand=Plus/Plus
Query 1 ATGAAAAGTCTCTCATTTCTTGCAATTCTATCTCTCTTGGCTATAACACTTTCATTAACC 60
||||||||| |||||||||||||| || ||||| ||||||| |||||||||||||||| |
Sbjct 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAGC 60
Query 61 AAGGCTTCAGACCCAAGCCCTCTTCAGGACTTCTGCGTCGGGGTGGACACCCCAGCTTAT 120
|||||||| ||||||||| ||||||||||||| ||||| || || |||||||||| ||
Sbjct 61 AAGGCTTCGGACCCAAGCTCTCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAGAT 120
Query 121 GGCGTATTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGATGACTTC 180
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACTTC 180
Query 181 TTTATCT-CAGGGATTAACAAACCAAGAACACCTAATCCAAAAACTGGGTCTATTGTGAC 239
||| | | ||||| | || | ||||| |||||||||||||||||||||||| || ||
Sbjct 181 TTTTT-TACAGGGCTCCACGAGGCAAGACCACCTAATCCAAAAACTGGGTCTAACGTAAC 239
Query 240 ACCCGTCAATGTTAACCAGATTCCAGGGTTAAACACCCTTGGAATCTC-CATTGTCCGTA 298
| |||||||||||||| | | |||||||||||||| ||||||||||| | |||||||||
Sbjct 240 AGCCGTCAATGTTAACAACCTACCAGGGTTAAACACTCTTGGAATCTCAC-TTGTCCGTA 298
Query 299 TTGATTATGCAATAAACGGACAGAACCCACCTCACACTCATCCACGTGCCTCCGAGATCT 358
| || |||| | | |||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 299 TCGACTATGGAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCGAGGTCT 358
Query 359 TGTATGTCGCG-TATGGAACACTTTTAGTTGGGTTTGTCACGTCAAACCCCGAAAATCGG 417
||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 359 TGTATGTCGCGGT-TGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAAAATCGC 417
Query 418 CTCTTT-ACTAAAGTACTCTACGAGGGTGATGTATTCGTGTTTCCAGAGGGACTCATTCA 476
|| ||| | |||| ||| |||||||||||||| || ||||||||| |||||||||||||
Sbjct 418 CT-TTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTCATTCA 476
Query 477 TTTCCAAGCGAACGTTGGGAAATATCCCGCGGTTGCATTCGCTGGTCTGAGCAGCCAAAA 536
|||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 477 TTTCCAAGTGAACGTTGGAAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAGCCAAAA 536
Query 537 CCCAGGGGTCATCACTATAGCCGACACCGTGTTTGGGTCTAACCCACCA-ATAGACCCGA 595
||| || ||||||||||| || ||||||||||||||||||||||||| | |||||||| |
Sbjct 537 CCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCAC-AGATAGACCC-A 594
Query 596 A-TGTTCTTGCAACG-GCGTTCCAG-TTGGACGCTACGACTGTCATGGAACTACAGACTA 652
| | ||||||||| | || |||||| ||| || ||| || ||||||||| |||||||| |
Sbjct 595 AGTTTTCTTGCAA-GTGCATTCCAGGTTG-ACCCTAAGATTGTCATGGATCTACAGACCA 652
Query 653 AGTTCAAAAAA 663
|||||| ||||
Sbjct 653 AGTTCATAAAA 663
> AT5G38960.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15592992-15593783 FORWARD LENGTH=666
Length=666
Score = 501 bits (271), Expect = 3e-141
Identities = 530/651 (81%), Gaps = 34/651 (5%)
Strand=Plus/Plus
Query 19 CTTGCAATTCTATCTCTCTT---GGCTAT-AACACTTTCATTAACCAAGGCTTCAGACCC 74
||||||||| ||| |||||| |||| | ||||||| |||| ||| ||||| |||||
Sbjct 16 CTTGCAATTTTATATCTCTTGGCGGCT-TCAACACTTCCATTTGCCATTGCTTCGGACCC 74
Query 75 AAGCCCTCTTCAGGACTTCTGCGTCGGGGTGGACACCCCAGCTTATGGC-GTATTTGTGA 133
|||||| ||||| ||||| || |||| || ||||||||||| || || | |||||||
Sbjct 75 AAGCCCCCTTCAAGACTTTTGTATCGGTGTCAACACCCCAGCTAAT-GCTCTGTTTGTGA 133
Query 134 ACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGATGACTTCT-TTATCTCAGGG 192
||||||| |||||||||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct 134 ACGGAAAATTCTGCAAGGACCCGAAGCTTGTCACAGCAGATGACTTCTATT-TCTCAGGG 192
Query 193 ATTAACAAACCAAGAAC-ACCT-AATCCA--AAAACTGGGTCTATTGTGACACCCGTCAA 248
|| |||| ||||||| | || |||| | | |||||||| |||||| |||| ||
Sbjct 193 CTTGACAAGGCAAGAACTA-CTGAATCTAGTCCAGTTGGGTCTAACGTGACAACCGTGAA 251
Query 249 TGTTAACCAGATTCCAGGGTTAAACACCCTTGGAATCTC-CATTGTCCGTATTGATTATG 307
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 252 TGTTAATCAGATTCCAGGGTTAAACACCCTTGGAATCTCAC-TTGTCCGTATTGATTATG 310
Query 308 CAATAAACGGACAGAACCCACCTCACACTCATCCACGTGCCT-CCGAGATCTTG-TATGT 365
||| || ||||| ||||| |||||||| |||||||| || | ||||||||||| | |||
Sbjct 311 GAATTAATGGACAAAACCCGCCTCACACGCATCCACGCGC-TACCGAGATCTTGCT-TGT 368
Query 366 CGC--GTATGGAACACTTTTAGTTGGGTTTGTCACGTCAAACCCCGAAAATCGGCTCTTT 423
| | | | ||||| ||||| ||||| ||| || | ||| |||||||||||| || ||
Sbjct 369 C-CAAGAA-GGAACTCTTTTCGTTGGTTTTTTCTCATCATTCCCCGAAAATCGCCTATTC 426
Query 424 A-CTAAA-GTACTCTACGA-GGGTGATGTATTCGTGTTTCCAGAGGGACTCATTCATTTC 480
| | ||| | ||| || | ||| |||||||| |||||||||||||||||||||||||||
Sbjct 427 AACAAAACG--CTCAACAAAGGG-GATGTATTTGTGTTTCCAGAGGGACTCATTCATTTC 483
Query 481 CAAGCGAACGTTGGGAAATATCCCGCGGTTGCATTCGCTGGTCTGAGCAGCCAAAACCCA 540
|||| |||| |||| ||| | ||||| |||||||||||| ||| || |||||||||||
Sbjct 484 CAAGTGAACATTGGAAAACAACCCGCTGTTGCATTCGCTTCTCTAAGTAGCCAAAACCCT 543
Query 541 GGGGTCATCACTATAGCCGACACCGTGTTTGGGTCTAACCCACCAATAGACCCGAATGTT 600
|| ||||||| ||| | ||||| ||||||||||||| || || |||||||||||||||
Sbjct 544 GGTGTCATCATTATCGGTAACACCTTGTTTGGGTCTAAACCGCCTATAGACCCGAATGTT 603
Query 601 CTTGCAACGGCGTTCCAGTTGGA-CGCTACGACTG-TCATGGAACTACAGA 649
||||||| ||| || |||||||| | ||| | || |||| |||||||||
Sbjct 604 CTTGCAAAGGCATTTCAGTTGGATC-CTAAGG-TGATCATTCAACTACAGA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5