BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891858
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38850.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 647 0.0
AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein ... 67.6 2e-10
> AT5G38850.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) | chr5:15555156-15558732 FORWARD LENGTH=3294
Length=3294
Score = 647 bits (350), Expect = 0.0
Identities = 430/468 (92%), Gaps = 7/468 (1%)
Strand=Plus/Plus
Query 392 GGGGAAGTCTTAATCA-TGGGCTTGACGAGTATGGTCTGAAATTGGATTTACAAGAACGA 450
|||||||||||||| | |||||||||||||||||||||||| || |||||||||||||||
Sbjct 741 GGGGAAGTCTTAAT-ATTGGGCTTGACGAGTATGGTCTGAAGTTAGATTTACAAGAACGA 799
Query 451 CTTCTTTCAAAGATTCTGAACCAAAAGGGTATGAGGATAAAGCATTTAGGCGCAATAAGA 510
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 800 CTTCTTTCAAAGATTATGAACCAAAAGGGTATGAGGATAGAGCATTTAGGCACAATAAGA 859
Query 511 GATAGGTTACATGACCAAAAAGTGCTTATCATTCTCGATGGTGTGAATGATCTCGAAGAA 570
||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||
Sbjct 860 GATAGGTTACATGACCAAAAAGTGCTTATCATTCTAGATGATGTTAATGATCTC---GAT 916
Query 571 TTGTATGCTTTGGCTAATCAGACAATATGGTTTGGTCCTGGAAGTAGGATTATCGTGGTA 630
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 917 TTGTATGCTTTGGCTGATCAGACAACGTGGTTTGGTCCTGGAAGTAGGATTATCGTGACA 976
Query 631 ATAGAAGATAAAGAGATTTTGCAGAAACATGGTATTAACAATGTCTACCATGTGGATTTT 690
| |||||| || ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 977 ACAGAAGACAACGAGCTTTTGCAGAAACATGATATTAACAATGTCTACCATGTGGATTTT 1036
Query 691 CCATCTAGAGAAGAAGCTCTTGAGATCTTTTGCAGATGTGCTTTTAGACAAAGCTCTCCA 750
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1037 CCATCTAGAAAAGAAGCTCTTGAGATCTTTTGCAGATGTGCTTTTAGACAAAGCTCTGCA 1096
Query 751 CCTTATGGGCTTCTAAAGCTTGCAGAACGAGTAACAGAGCTTTGTGGTAATCTTCCATTG 810
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CCTGATACGATTCTAAAGCTTGCAGAACGAGTAACAGAGCTTTGTGGTAATCTTCCATTG 1156
Query 811 GGTCT-TCGTGTCATAGGTTCATATTTGCGTGGGAAGACTAAGGATGA 857
||||| | ||||||||||||||| ||| | ||||| ||| |||||||
Sbjct 1157 GGTCTCT-GTGTCATAGGTTCATCTTTACACGGGAAAACTGAGGATGA 1203
Score = 379 bits (205), Expect = 3e-104
Identities = 294/336 (88%), Gaps = 10/336 (3%)
Strand=Plus/Plus
Query 62 ATCCATCTGATGTACGGAAACAGACCGGAGATTTTGGGAGGGCCTACAAAAA-ATGTTGT 120
||||||| ||||||||||||||||||||||||||||||| ||||| |||||| | |||||
Sbjct 333 ATCCATCCGATGTACGGAAACAGACCGGAGATTTTGGGAAGGCCTTCAAAAATA-GTTGT 391
Query 121 GCAAGTAAAACTAAGGAGGAGAGGCAGAGATGAATCCAAGCTTTAATTGTTGTGGGCAAC 180
|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||
Sbjct 392 AAAAGTAAAACTAAGGAGGAGAGGCAGAGATGGATCCAAGCTTTAATTTTTGTTGGCAAC 451
Query 181 ATAGCTGGAGAAAACTTGCT-AAACTGGGAAAATGAAGCGGATATGATTGAAAAGATAGC 239
|||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 452 ATAGCTGGAGAACACTCGCTGAAA-TGGGAAAATGAAGCGGATATGATTGAAAAGATAGC 510
Query 240 CAAAGATACTT-AGGAGAAACTAAATACTACACCCTCTAGGGATTTTGATGGGATA-GTG 297
||||||| || || | ||||| ||| ||||||| |||| |||||||||| || |||
Sbjct 511 CAAAGATGTTTCAG-ATAAACTGAATGCTACACCTTCTAAAGATTTTGATGC-ATTTGTG 568
Query 298 GGACTTAAAGTT-CACATAAAGGAATTAAGTTCTCTGCGATACCTAGACTGTGATCAAGT 356
|||||| | ||| ||||| | ||||||||||||||||| ||||||||||| ||| |||||
Sbjct 569 GGACTTGA-GTTTCACATTAGGGAATTAAGTTCTCTGCTATACCTAGACTATGAGCAAGT 627
Query 357 GAGGATGGTAGGATTATGTAGCCCTATAGGAATCGG 392
|||||| |||||| | ||| ||||| |||||||||
Sbjct 628 GAGGATAGTAGGAATCTGTGGCCCTGCAGGAATCGG 663
> AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein
(TIR-NBS-LRR class) | chr1:21167589-21173632 FORWARD LENGTH=3657
Length=3657
Score = 67.6 bits (36), Expect = 2e-10
Identities = 51/58 (88%), Gaps = 2/58 (3%)
Strand=Plus/Plus
Query 910 CTTGTTGAACTTGATATGC-AGTATAGCCTGCTCCAGAAGCTATGGGAAGGAACTCAG 966
||||||||| | |||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1922 CTTGTTGAAGTCAATATGCAAG-ATAGCGAGCTCCAGAAGCTATGGGAAGGAACTCAG 1978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5