BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891874
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13010.1 | Symbols: | Oxidoreductase, zinc-binding dehydrog... 885 0.0
> AT4G13010.1 | Symbols: | Oxidoreductase, zinc-binding dehydrogenase
family protein | chr4:7600551-7602729 FORWARD LENGTH=1283
Length=1283
Score = 885 bits (479), Expect = 0.0
Identities = 717/832 (86%), Gaps = 16/832 (2%)
Strand=Plus/Plus
Query 1 ATGATTCGGCCTTTTCTGCCTCGCAAGTTCCCCTTCATTCCTGCTACTGATGTTGCTGGT 60
||||| || || |||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 297 ATGATCCGCCCATTTCTGCCCCGCAAGTTCCCCTGCATTCCAGCTACTGATGTTGCTGGA 356
Query 61 GAGGTCGTTGAGGTTGGATCAGGAGTCAAGAATTTAAAGGCTGGTGACAAAGTTGTTG-G 119
|||||||||||||||||||||||||| || ||||| |||||||||||||||||||| | |
Sbjct 357 GAGGTCGTTGAGGTTGGATCAGGAGTAAAAAATTTTAAGGCTGGTGACAAAGTTGTAGCG 416
Query 120 GATTGTCAGCTATCTAACCGGAGGTGGTCTTGCTGAGTACG-TAGTTGTAAGTGAAAAGC 178
| || | ||| ||||| |||||||| |||||||||| || | |||| || || ||||
Sbjct 417 G-TTCTTAGCCATCTAGGTGGAGGTGGACTTGCTGAGTTCGCT-GTTGCAACCGAGAAGC 474
Query 179 TGACCATCAAAAGGCCTCAAGAAGTGGGAGCAGCTGAAGCAGCTGCGTTGCCTGTGCCAG 238
|||| ||||||| ||||||||||||||||||||||||||||| || || |||||| | |
Sbjct 475 TGACTGTCAAAAGACCTCAAGAAGTGGGAGCAGCTGAAGCAGCAGCTTTACCTGTGGCGG 534
Query 239 GTCTAACTGCTCTTTATGTTCTAACGCATCAC-GCGGGGTTGAAACTGGATGGCACAGAC 297
||||||| ||||| | | ||| || ||| | ||||||||||| |||||||| |||| |
Sbjct 535 GTCTAACCGCTCTCCAAGCTCTTACTAATC-CTGCGGGGTTGAAGCTGGATGGTACAGGC 593
Query 298 AAGCAGGCGAATATCTTGGTCACAGCAGCATCTGGTGGGGTTGGCCACTATGCAGTCCAG 357
||| ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 AAGAAGGCGAACATCCTGGTCACAGCAGCATCTGGTGGGGTTGGTCACTATGCAGTCCAG 653
Query 358 CTGGCAAAGCTTGGGAACGCTCATGTAACAGCCACATGTGGAGCCCGAAACATCGATTTT 417
|||||||| |||| || ||||| ||||| || |||||||| ||||| ||||| || |||
Sbjct 654 CTGGCAAAACTTGCAAATGCTCACGTAACCGCTACATGTGGTGCCCGGAACATAGAGTTT 713
Query 418 GTAAAATCGTTAGGAGCGGACGAGGTTCTCGACTACAAGACTCCTGAGGGAGCCACCCTC 477
|| |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 714 GTCAAATCGTTGGGAGCGGATGAGGTTCTCGACTACAAGACTCCCGAGGGAGCCGCCCTC 773
Query 478 AAGAGTCCATCAGGTAAGAAATATGACGTTGTGATCCATTGCGCAAATAGTATCCCGTTC 537
|||||||| || ||||| |||||||||| |||| ||||||| ||||| | || || ||
Sbjct 774 AAGAGTCCGTCGGGTAAAAAATATGACGCTGTGGTCCATTGTGCAAACGGGATTCCATTT 833
Query 538 TCAACATTCGAACTAAATTTGTCCGAAAACGGAAAGGTTATAGACATCACGCCAAGGCCT 597
|| |||||||| ||||||||| |||||||| ||||| ||||||||||| || |||||
Sbjct 834 TCGGTATTCGAACCAAATTTGTCGGAAAACGGGAAGGTGATAGACATCACACCGGGGCCT 893
Query 598 AGTGCCATATGGACTTATGCGGTTAAGAATTTAACTATGTCGAAGAAGCAATTTGTGCCA 657
| ||| || |||||||||||||||||||| |||| ||||| |||||||| || ||||||
Sbjct 894 AATGCAATGTGGACTTATGCGGTTAAGAAAATAACCATGTCAAAGAAGCAGTTAGTGCCA 953
Query 658 CTCTTTTTGATCCAAAAATTAGCTGAGAATTTGGAGTATT-TGGTGAATCTAGTGAAAGA 716
||||| ||||||| ||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 954 CTCTTGTTGATCC-CAAA--AGCTGAGAATTTGGAGT-TTATGGTGAATCTAGTGAAAGA 1009
Query 717 AGGGAAAGTGAAGACTGTGATTGACTCGAAGCACTC-TTTGAGCAAAGCCGAGGATGCTT 775
||||||||||||||| ||||||||||| ||||| || |||||||||||| ||||||||||
Sbjct 1010 AGGGAAAGTGAAGACAGTGATTGACTCAAAGCA-TCCTTTGAGCAAAGCGGAGGATGCTT 1068
Query 776 GGCCGGCCAAAAGTATCGATGGCCATGCTACTGGGAAGATCATTGTCGAGCC 827
|| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1069 GG--G-CCAAAAGTATCGATGGTCATGCTACTGGGAAGATCATTGTCGAGCC 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5