BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891912

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38400.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   573    5e-163


> AT5G38400.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:15375846-15376301 
FORWARD LENGTH=456
Length=456

 Score =  573 bits (310),  Expect = 5e-163
 Identities = 416/465 (89%), Gaps = 15/465 (3%)
 Strand=Plus/Plus

Query  1    ATGCACGTGGATTCTATGAAGAGAGCTCGTGTAAGCTCGGTGTATGAAGGTAAAGAGGGA  60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  1    ATGCACGTGGATTCTATGAAGAGAGCTCGTGTAAGCGCGGTGTATGAAGGTAAAGAGAGA  60

Query  61   AATAGATCGAGAAAAGGAGAGGAAACTCGAAGAGATCAATCTAAACACGCGAGAATGACC  120
            |||||||| || || ||||||||||||||||| || || |||||||||||||||||||| 
Sbjct  61   AATAGATCAAGCAACGGAGAGGAAACTCGAAGGGAACAGTCTAAACACGCGAGAATGACG  120

Query  121  GCGAAAGCTCGAATGAACGTTCACAAAGAGAGCATGAAA--TAT-CTGCCTAAACATAAA  177
            || |||||||| ||||||||| |||||||||||||||||  | | | |||||||| ||| 
Sbjct  121  GCAAAAGCTCGGATGAACGTTTACAAAGAGAGCATGAAACCTCTGCCGCCTAAACGTAAG  180

Query  178  AAATCGATGATGATCATGAAG-TTGATGAGAAAGAAGGATGAGATGCAAAATGATCAAAG  236
            |||||| |||||||||| ||| ||||||||||||||||| || | |||| ||||||||| 
Sbjct  181  AAATCGTTGATGATCAT-AAGTTTGATGAGAAAGAAGGAAGATACGCAAGATGATCAAAA  239

Query  237  TAATGTTATTGCTAGTGTTGTagaaaaggaaaaggaggagaaagagaaaggcgcggtgga  296
            ||||||||   |   |||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct  240  TAATGTTA---C---TGTTGTCGAAAAGGAAAAGGAGGAGAAAGAGAAAGGCACGGTGCA  293

Query  297  gaatatcaaggaaaa-gatggaaaTGCTCTCTA-CAAAATGTGTTGAGGAGTGGCCGTAT  354
            ||| |||| |||||| |  |||||||||||| | ||||||||||||||||||||||| | 
Sbjct  294  GAACATCAGGGAAAATG-CGGAAATGCTCTC-ATCAAAATGTGTTGAGGAGTGGCCGCAC  351

Query  355  AAGTTAACATATGAAGAGGAATGGACGTGGTTTGCGTTTGCGTTTGGGTGGGAATGGTGG  414
            | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  352  ATGTTAACATATGAAGAGGAATGGACGTGGTTTGCGTTTGCGTTTGGGTGGGGATGGTGG  411

Query  415  CAGCGTTATGACGCGGTCATGAGCGGTGAGAGTTGGTTTAACTAA  459
            ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct  412  CAGCGTTATGACGCGGTGATGAGCGGTAAGAGTTGGTTTAACTAA  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5