BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891920
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38380.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1742 0.0
> AT5G38380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF6, transmembrane (InterPro:IPR000620); BEST
Arabidopsis thaliana protein match is: Cation efflux family
protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins
in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69;
Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9
(source: NCBI BLink). | chr5:15345444-15348427 FORWARD LENGTH=1512
Length=1512
Score = 1742 bits (943), Expect = 0.0
Identities = 1044/1092 (96%), Gaps = 9/1092 (1%)
Strand=Plus/Plus
Query 1 ATGATGTCGCCGAAACAAATCTCCGACGATCGAGGATCTTCACATTTCAGGAATACTCCT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 217 ATGATGTCGCCGAAGCAAATCTCCGACGATCGAGGATCTTCACATTTCAGGCATACACCA 276
Query 61 TTCCAGATAATCCACCTTATTGGGAACTTTTTTAGGATATGGTCAGTTTATTCTATGTAC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 277 TTCCAGATAATCCACCTTATTGGGAACTTTTTTAGGATATGGTCAGTATATTCGATGTAC 336
Query 121 CGATACTTGAATCAGACGGGAGCGCCTGTTGTTCTCTTTCTCTTCTGCTGTTTGGTGCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 337 CGATACTTGAATCAGACGGGAGCGCCTGTTGTTCTCTTTCTCTTCTGCTGTCTGGTGCCT 396
Query 181 TCATCTATCATCTTCTTGATACTTCAAAAACCATGGAAAGGAAGGGCACTTTCTAATCAA 240
||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 397 TCATCAATCATCTTCTTGATAATTCAAAAGCCATGGAAAGGAAGGGCTCTTTCTAATCAA 456
Query 241 CAGATTGTACCTTCTCTTATCAATGGAGTCATCACAGCTCTATACTTCATCTTATGGGGA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 457 CAGATTGTACCTTCTCTTATCAATGGAGTCATCACGGCTCTATACTTCATCTTATGGGGA 516
Query 301 AAAGGTCTCAAGTCTTGTGGACCTCTTAGAGCTATCTTATCAGAGTACTCTGGTGCTGTT 360
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 517 AAAGGTCTCAAGTCTTGTGGACCTCTTAGAGCTATCTTGTCAGAGTATTCTGGTGCTGTT 576
Query 361 CTTGGAGTACTTTCTGGAGTATTGTATGGACGGAGAGGTCATGTGTGGAAAAAGGTAGGT 420
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 577 CTTGGAGTACTTTCTGGAGTATTATATGGACGGAGAGGCCATGTGTGGAAAAAGGTAGGT 636
Query 421 GGCCTCATTGCAATGTTGGTAGCTCtttttttCTTGTCTCAAGGATGGGCGACATCATCT 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GGCCTCATTGCAATGCTGGTAGCTCTTTTTTTCTTGTCTCAAGGATGGGCGACATCATCT 696
Query 481 CTCTCCCCTTTTTATATCCTTTTACGCA-A-TACTGAAACCAAAGAGGAAGAAGTACAAA 538
||||||||||||| | | | | | | |||||||||||||||||||||||||||||
Sbjct 697 CTCTCCCCTTTTT-CA-AC--AAAAG-ATAGTACTGAAACCAAAGAGGAAGAAGTACAAA 751
Query 539 CAGAACAGGCACTAGGTATGATGGGAATGATGATACCAGTTTTTGCTGGAATCTTATCAG 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CAGAACAAGCACTAGGTATGATGGGAATGATGATACCAGTTTTTGCTGGAATCTTATCAG 811
Query 599 CGTTAAGGCGGGTTATCGCGCGCCGTGTTTCTCTAAAGAACCAGCAGAAGAAACGACTGC 658
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 812 CATTAAGGCGGGTTATCGCACGCCGTGTTTCTCTAAAGAACCAGCAGAAGAAACGACTAC 871
Query 659 ATGCGATAACCATTACTTCTGCAACCTGTTTCTTGTTTCCTGTGGCTATGTGGGACCTTA 718
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 872 ATGCGATAACCATTACTTCTGCAACCTGTTTCTTGTTCCCTGTGGCCATGTGGGACCTTA 931
Query 719 TCATAGGGTCATCTTCTGGGAAAACATCCGAGTTGCCATTTTCTGCGTGGGCTTTCCTTA 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 932 TCATAGGGTCATCTTCTGGGAAAACATCCGAGTTACCATTTTCTGCGTGGGCTTTCCTTA 991
Query 779 GCACCATTGTTTTCGGAATCATCCTAATATTCTATGTTGACAATATCGCAGAAGAGAGAT 838
|||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 992 GCACCATTATTTTCGGGATCATCCTAATATTCTACGTTGATAATATCGCAGAAGAGAGAT 1051
Query 839 TGCATATGGTGTTTTCTTCGCCGAGGCATTTAATGGTAGCAGGTGCT-TGCATAATAGTC 897
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1052 TGCATATGGTGTTTTCTTCGCCGAGGCATTTAATGGTAGCAGGTG-TATGCATAATAGTC 1110
Query 898 ATGGAGTTAGCTTACGAGATGGATTTTTCTCTTGCCGGTTTCATCGTCTGTTGCTTAGTA 957
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1111 ATGGAGTTAGCTTATGAGATGGATTTTTCTCTTCCCGGTTTCATCGTTTGTTGCTTAGTA 1170
Query 958 TTAGGGTTTGGAATATTCGAGGCAACATCTCTCGAACGTAGCAAGAAAGACTCTTCGTTG 1017
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 1171 TTAGGGTTTGGAATATTCGAGGCAACATCTCTAGAACGGAACAAGAAAGACTCTTCGTTG 1230
Query 1018 AAATCAGAAGATCCATCAAACGGAATCCTTGGTAATAATGACTTTGATACTTCTCCAATT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AAATCAGAAGATCCATCAAACGGAATCCTTGGTAATAATGACTTTGATACTTCTCCAATT 1290
Query 1078 CTTCCCATATAG 1089
||||||||||||
Sbjct 1291 CTTCCCATATAG 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5