BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891928
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38344.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 905 0.0
AT5G38340.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 614 4e-175
AT3G44670.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 416 1e-115
AT2G14080.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 403 9e-112
> AT5G38344.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr5:15325831-15326988 FORWARD LENGTH=1158
Length=1158
Score = 905 bits (490), Expect = 0.0
Identities = 599/650 (92%), Gaps = 13/650 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCTGCTTTTCTCTCTAGTTTTTGTGTTGCTGCCATAACTTTCTTCACGATTTTG 60
||||||||| ||||||||||| ||||||||| |||||||||||| |||||||| ||||
Sbjct 120 ATGGATTCTTCTTTTCTCTCTGGTTTTTGTGCTGCTGCCATAACCTTCTTCACTCTTTTC 179
Query 61 GGTACAATATTTTTCATGTTTTATAAAAAAGTCAAATCCCATCAAGAAAACAAAACAATA 120
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 180 GGTACAATATATTTCATGTTTTATAGAAAAGGCAAATCCCATCAAGAAAACAAAACAATA 239
Query 121 GcttcttcttcttcttctttatctatttcatctacttcatcttcttTGTCTCGAAAACGG 180
| ||||||| | || ||||||||||||||||| |||||||||| |||||||||||
Sbjct 240 G---CTTCTTC-T-TT-AATATCTATTTCATCTACTCCATCTTCTTTACCTCGAAAACGG 293
Query 181 AAACACGATGTCTTCCCAAGCTTCCACGGGGCAGATGTTCGAAAAACATTTCTTGCTCAC 240
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 294 AAACACGATGTCTTCCCTAGCTTCCACGGGGCAGATGTTCGCAAAACCTTTCTTGCTCAC 353
Query 241 ATCCTAAAAGAGTTCAAA-GGAAAGGGAATCAG-TCCATTCATTGATAATGATATCGAGA 298
|||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||||||
Sbjct 354 ATCCTAAAAGAGTTCAAAGGGAAA-GGAGTC-GTTCCATTCATTGATAATGATATCGAGA 411
Query 299 GGAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATCAGAGGATCAAAGATCGCGATCG 358
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 412 GGAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATTAGAGGATCGAAGATCGCGATCG 471
Query 359 TCTTGCTCTCGAGGAACTACGCTTCTTCGTCTTGGTGCCTAAACGAGTTGGTGGAGATCA 418
|||||||||| |||||||| |||||||| || |||||| |||||||||||||||||||||
Sbjct 472 TCTTGCTCTCAAGGAACTATGCTTCTTCTTCGTGGTGCTTAAACGAGTTGGTGGAGATCA 531
Query 419 TGAAGTGTAGAGAAGAACTGGGTCAAACAGTGATGACCATTTTCTATGATGTTGATCCAA 478
|||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 532 TGAAGTGTAGAGAACAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCCAA 591
Query 479 CAGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACGTGTAAAGGTA 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 592 CAGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACTTGTAAAGGTA 651
Query 539 AAACCAAA-GAGGACATTAAGAGATGGCAAAACGTTTTGGAGTCTGTGGCAACAATCGCT 597
|| ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 652 AA-CCAAAAGAGGAAATTAAGAGATGGCAAAAAGTTTTGGAGGATGTGGCAACAATCGCT 710
Query 598 GGGGAGCATTCCCGTAACTGGTTAGCTTTCTTGATTTATACTT-GCCCTG 646
||||||||||||||||||||||||||||||| |||||||| || || |||
Sbjct 711 GGGGAGCATTCCCGTAACTGGTTAGCTTTCTGGATTTATATTTTGCTCTG 760
> AT5G38340.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:15320507-15324061 FORWARD LENGTH=3180
Length=3180
Score = 614 bits (332), Expect = 4e-175
Identities = 529/618 (86%), Gaps = 37/618 (6%)
Strand=Plus/Plus
Query 1 ATGGATTCTGCTTTTCTCTCTAGTTTTTGTGTTGCTGCCATAACTTTCTTCACGATTTTG 60
||||||||| ||||||||||||||||||||| | | ||||||| |||||||||| ||||
Sbjct 1 ATGGATTCTTCTTTTCTCTCTAGTTTTTGTGCTACAGCCATAATTTTCTTCACGCTTTTC 60
Query 61 GGTACAATATTTTTCATGTTTTATAAAAAAGTCAAATCCCATCAAGAAAACAAAACAATA 120
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GGTACAATATATTTCATGTTTTATAGAAAAGTCAAATCCCATCAAGAAAACAAAACAATA 120
Query 121 Gcttcttcttcttcttctttatctatttcatctactt-catcttcttTGTCTCGAAAACG 179
| ||||||||||| || || || ||| || ||||||||||||| | ||
Sbjct 121 G---------CTTCTTCTTTAGCTCTTCCAACTA-TTCCATCTTCTTTGTC-C-----CG 164
Query 180 GAAACACGATGTCTTCCCAAGCTTCCACGGGGCAGATGTTCGAAAAACATTTCTTGCTCA 239
||| |||||||||| || || |||||||| ||||||||||| ||||| |||||| ||||
Sbjct 165 AAAATACGATGTCTTTCCGAGTTTCCACGGAGCAGATGTTCGCAAAACCTTTCTTTCTCA 224
Query 240 CATCCTAAAAGAGTTCAAAGGAAAGGGAATCAG-TCCATTCATTGATAATGATATCGAGA 298
||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||| |
Sbjct 225 CATGCTAAAAGAGTTCAAACGAAAGGGAATC-GTTCCATTCATTGATAATGATATCGACA 283
Query 299 GGAGCAAGTCTATCGGTCCTGAGCTCATA-GAAGCTATCAGAGGATCAAAGATCGCGATC 357
||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 284 GGAGCAAGTCTATTGGTCCTGAGCTC-GACGAAGCTATCAGAGGATCAAAGATCGCAATC 342
Query 358 GTCTTGCTCTCGAGGAACTACGCTTCTTCGTCTTGGTGCCTAAACGAGTTGGTGGAGATC 417
||| ||||||| | |||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 343 GTCATGCTCTCAAAGAACTATGCTTCTTCATCATGGTGCCTAAACGAGTTGGTGGAGATC 402
Query 418 ATGAAGTGTAGAGAAGAACTGGGTCAAACAGTGATGACCATTTTCTATGATGTTGATCCA 477
| ||| |||||| |||| || |||||||||||||||||||||||||| ||||| |||
Sbjct 403 ACGAAATGTAGAAAAGATTTGAATCAAACAGTGATGACCATTTTCTATGGCGTTGACCCA 462
Query 478 ACAGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAA-AACGTGT-AAAG 535
||||| |||||||||||||||||||| ||||||||||||||| | || ||| ||| ||||
Sbjct 463 ACAGATGTAAAGAAGCAGACAGGAGAGTTTGGGAAGGTCTTCGA-AAGAACTTGTGAAAG 521
Query 536 GTAAAACCAAAGAGGA-CA--TTAAGAGATGGCA-A-AACGTTTTGGA-GTCTGTGGCAA 589
|||||| | ||||| || |||||| |||| | | || |||||||| | || |||||
Sbjct 522 -TAAAAC-A--GAGGAGCAGGTTAAGACATGG-AGAGAA-GTTTTGGATGG-TGCGGCAA 574
Query 590 CAATCGCTGGGGAGCATT 607
|||||||||| |||||||
Sbjct 575 CAATCGCTGGAGAGCATT 592
> AT3G44670.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr3:16216950-16221617 FORWARD LENGTH=3965
Length=3965
Score = 416 bits (225), Expect = 1e-115
Identities = 408/496 (82%), Gaps = 14/496 (3%)
Strand=Plus/Plus
Query 130 tcttcttctttatctatttcatctacttcatcttcttTGTCTCGAAAAC-GGAAACACGA 188
|||||| |||||||| || ||||| || || |||| ||||||| || | |||||||| |
Sbjct 339 TCTTCTGCTTTATCTCTTCCATCTCCTCCAACTTCAGTGTCTCG-AATCTGGAAACACCA 397
Query 189 TGTCTTCCCAAGCTTCCACGGGGCAGATGTTCGAAAAA-CATTTCTT-GCTCACATCCTA 246
|||||||| |||||||||||||||||||||||||||| || ||||| | |||||||||
Sbjct 398 CGTCTTCCCGAGCTTCCACGGGGCAGATGTTCGAAAAACCA-TTCTTAG-TCACATCCTC 455
Query 247 AAAGAGTTCA-AAGGAAAGGGAA-TCAGTCCATTCATTGATAATGATATCGAGAGGAGCA 304
|| ||||| || ||||||||| | | ||||| ||||||||| |||| |||||||| |
Sbjct 456 GAATCGTTCAGAA-GAAAGGGAATTGA-CCCATTTATTGATAATAATATAGAGAGGAGTA 513
Query 305 AGTCTATCGGTCCTGAGCTCATAGAAGCTATCAGAGGATCAAAGATCGCGATCGTCTTGC 364
|||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 514 AGTCGATCGGTCATGAGCTCAAAGAAGCTATCAAAGGATCAAAGATCGCGATCGTCTTGC 573
Query 365 TCTCGAGGAACTACGCTTCTTCGTCTTGGTGCCTAAACGAGTTGGTGGAGATCATGAAGT 424
|||| | |||||| |||||||| ||||||||||| | || || | || ||||||||||
Sbjct 574 TCTCAAAGAACTATGCTTCTTCATCTTGGTGCCTTGATGAATTAGCAGAAATCATGAAGT 633
Query 425 GTAGAGAAGAACTGGGTCAAACAGTGATGACCATTTTCTATGATGTTGATCCAACAGACG 484
|||| ||| ||||||| | ||| ||||| ||||||||||| || |||||||| |||
Sbjct 634 GTAGGGAATTGTTGGGTCAGATAGTCATGACTATTTTCTATGAAGTGGATCCAACTGACA 693
Query 485 TAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCA-AGAAAACGTGTAAAGGTAAAACC 543
||||||| ||||| || || ||||| || | ||||| | ||||| ||||||||||||||
Sbjct 694 TAAAGAAACAGACCGGTGAATTTGGAAAAGCCTTCACA-AAAACATGTAAAGGTAAAACA 752
Query 544 AAAGAGGACATTAAGAGATGGC-AAAACGTTTTGGAGTCTGTGGCAACAATCGCTGGGGA 602
|||||| | || |||||||| |||| | ||||||| |||||| |||||||| || ||
Sbjct 753 AAAGAGTATGTTGAGAGATGGAGAAAA-GCTTTGGAGGATGTGGCCACAATCGCCGGAGA 811
Query 603 GCATTCCCGTAACTGG 618
||||| || ||||||
Sbjct 812 ACATTCTCGCAACTGG 827
> AT2G14080.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr2:5925186-5929600 FORWARD LENGTH=3687
Length=3687
Score = 403 bits (218), Expect = 9e-112
Identities = 431/528 (82%), Gaps = 38/528 (7%)
Strand=Plus/Plus
Query 30 TGTTGCTGCCATAACTTTCTTCACGATTTTGGGTACAATATTTT-TCATGTTTTAT-AAA 87
|||||||| | | || |||||||| |||||||||||||||||| | ||| ||||| ||
Sbjct 66 TGTTGCTG-C-T-ACGTTCTTCACTCTTTTGGGTACAATATTTTAT-ATGATTTATGGAA 121
Query 88 AAAGTCAAATCCCATCAAGAAAACAAAACAATAGcttcttcttcttcttctttatctatt 147
|| || | | | |||| |||| | |||| || |||||||||| | | |||
Sbjct 122 AATTTCGAGT--C--CAAG-AAAC--TATAATAACTACTTCTTCTTC-AC-CT-CCTA-- 169
Query 148 tcatctacttc-atcttcttTGTCTCGAAAACGGAAACACGATGTCTTCCCAAGCTTCCA 206
||||| | | ||||||||||||| | || | |||||||||||||||||| ||||||||
Sbjct 170 -CATCT-CCCCAATCTTCTTTGTCTTGTAACCAGAAACACGATGTCTTCCCCAGCTTCCA 227
Query 207 CGGGGCAGATGTTCGAAAAACATTTCT-TGCTCACATCCTAAAAGAG-TTCAAAGGAAAG 264
|||||||||||| || ||| ||||||| | |||||| | |||||| || |||| ||||
Sbjct 228 CGGGGCAGATGTGCGCAAATCATTTCTCAG-TCACATTTTGAAAGAGTTTAAAAGAAAAG 286
Query 265 GGAATCAG-TCCATTCATTGATAATGATATCGAGAGGAGCAAGTCTATCGGTCCTGAGCT 323
|| ||| | | | |||||||||||| |||| ||||||||||| || |||||||| || ||
Sbjct 287 GG-ATC-GATACGTTCATTGATAATAATATTGAGAGGAGCAAATCGATCGGTCCAGAACT 344
Query 324 CATAGAAGCTATCAGAGGATCAAAGATCGCGA-TCGTCTTGCTCTCG-AGGAACTACGCT 381
||||||||| |||| |||||| ||||| || | | |||||||||||| ||| ||||||||
Sbjct 345 CATAGAAGCAATCAAAGGATCTAAGATTGC-AGTTGTCTTGCTCTCGAAGG-ACTACGCT 402
Query 382 TCTTCGTCTTGGTGCCTAAACGAGTTGGTGGAGATCATGAAGTGTAGAGAAGAACTG--G 439
|| ||||| |||||||| ||||||||||||||||||||||||||||| ||| || || |
Sbjct 403 TCCTCGTCGTGGTGCCTGAACGAGTTGGTGGAGATCATGAAGTGTAG-GAA-AA-TGTTG 459
Query 440 G-TCAAACAGTGATGACCATTTTCTATGATGTTGATCCAACAGACGTAAAGAAGCAGACA 498
| ||||||||||||||| ||||||||||| || |||||||| || ||||||||||| ||
Sbjct 460 GATCAAACAGTGATGACAATTTTCTATGAAGTGGATCCAACTGATGTAAAGAAGCAAACC 519
Query 499 GGAGATTTTGGGAAGGTCTTCAAGAAAACGTGTAAAGGTAAAACCAAA 546
||||| ||||||||||||||||||||||| |||| |||||||| |||
Sbjct 520 GGAGACTTTGGGAAGGTCTTCAAGAAAACTTGTATGGGTAAAAC-AAA 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5