BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891941
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38290.2 | Symbols: | Peptidyl-tRNA hydrolase family protei... 1083 0.0
> AT5G38290.2 | Symbols: | Peptidyl-tRNA hydrolase family protein
| chr5:15303336-15305548 FORWARD LENGTH=1075
Length=1075
Score = 1083 bits (586), Expect = 0.0
Identities = 692/741 (93%), Gaps = 15/741 (2%)
Strand=Plus/Plus
Query 1 ATGTTTTGTTCATCATCTCCTCCAATTACATCTCTTCTCTACCCAAAAG----------- 49
||||||||| |||||||| ||||||||||||||| ||||||||||||||
Sbjct 168 ATGTTTTGTGCATCATCTTCTCCAATTACATCTCCTCTCTACCCAAAAGCTTATAAATTT 227
Query 50 -CTCaaaaaaaaCCGAATTCAAAGAGATTTTCCTCTCTGCGTGCTTCATTACCTGTTTCT 108
|||||| |||| ||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 228 TCTCAAACAAAATCGAATTCGAAGAGATTTTCCTCTCTGCGTGCTTCGTTGCCTGTTTCT 287
Query 109 GATAACAAG---CTTAAAGTTGAATACACACCATGGCTTATCGTTGGACTTGGTAACCCT 165
||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 288 GATAACAAGCTTCTTAAATTTGAATACACACCATGGCTTATTGTTGGACTTGGTAACCCT 347
Query 166 GGATTAAAGTATTACGGAACAAGGCATAATATTGGTTTTGAGATGATTGATCATATAGCT 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GGATTAAAGTATTACGGAACAAGGCATAATATTGGTTTTGAGATGATTGATCATATAGCT 407
Query 226 CAAGCAACGGAGATTTCTATGAACACTATACAGTCCAAGGCTTTAGTTGGGATAGGTTCT 285
| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 408 CGAGCAACGGATATTTCTATGAACACAATTCAGTCCAAGGCTTTAGTTGGGATAGGTTCT 467
Query 286 GTTGGAGAAGTACCGATTTTGTTGGTTAAACCTCAAGCTTACATGAATTTCAGCGGTGAA 345
||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 468 GTTGGAGAAGTTCCGATTTTGTTGGTTAAACCTCAAGGATACATGAATTTCAGTGGTGAA 527
Query 346 TCGGTTGGGCCGTTAGCGGCTTACTATCAAATACCCTTACGCCACATTCTGATGATATAT 405
||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 528 TCGGTTGGGCCGTTAGCTGCTTACTACCAAATACCCTTACGTCACATTCTTATGATATAT 587
Query 406 GATGACATGGGTTTGCCTAATGGTGTCTTGAGGCTTCAACCAAAAGGAGGTCATAGCCAA 465
||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||
Sbjct 588 GATGACATGGGTTTGTCTAATGGTGTCTTGAGACTTCAACCAAAAGGTGGGCATAGCCAA 647
Query 466 CATAATGGATTGAAGAATGTGACAGAACATTTAAATGGTTGTCGCGGCTATCCCCGCTTA 525
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CACAATGGATTGAAGAATGTGACAGAACATTTAAATGGTTGTCGCGGCTATCCCCGCTTA 707
Query 526 TCAATCGGAATTGGAAATCCACCAGGTAACATGGACATGAAAGCGTTTCTTCTCCAGAAA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TCAATCGGAATTGGAAATCCACCAGGTAACATGGACATGAAAGCGTTTCTTCTCCAGAAA 767
Query 586 TTCAGCCCCTTGGAGCGCAAACAGATTGATGCGGGACTAGAACAAGGTGTTGAAGGTGTG 645
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 768 TTCAGCCCCTTGGAGCGCAAACAGATGGATGAGGGACTGGAACAAGGTGTTGAAGGTGTG 827
Query 646 AAGACACTTGTTGAAGAGGGATTTAGTGACTCAATATCTCGATTCAATTTGGGGCAGAAA 705
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 828 AAGACACTTGTTGAAGAGGGGTTTAGTGACTCAATATCTCGATTCAATTTGGGACAGAAA 887
Query 706 TACAAGTTTCACACAGTTTGA 726
||||||||||| | |||||||
Sbjct 888 TACAAGTTTCATAAAGTTTGA 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5