BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891943
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00520.1 | Symbols: MATR | Intron maturase, type II family p... 119 2e-26
AT2G07712.1 | Symbols: | pseudogene, similar to maturase-relat... 119 2e-26
> ATMG00520.1 | Symbols: MATR | Intron maturase, type II family
protein | chrM:144294-146312 REVERSE LENGTH=2019
Length=2019
Score = 119 bits (64), Expect = 2e-26
Identities = 72/75 (96%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 8 TTGTAAATCAAGAAGGTGGCAAGATCCTTGCAGAGTTCCCCAATTACAGCATAGAGCTTG 67
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1901 TTGTAAATCAAGAAGGTGGCAAGATCCTTGCAGAGTTCCCC-A--ACAGCATAGAGCTTG 1957
Query 68 GGAAGCTCGGACCCG 82
|||||||||||||||
Sbjct 1958 GGAAGCTCGGACCCG 1972
> AT2G07712.1 | Symbols: | pseudogene, similar to maturase-related
protein, blastp match of 86% identity and 2.9e-305 P-value
to GP|840924|gb|AAA67711.1||U09988 maturase-related protein
{Glycine max} | chr2:3400730-3402757 REVERSE LENGTH=2028
Length=2028
Score = 119 bits (64), Expect = 2e-26
Identities = 72/75 (96%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 8 TTGTAAATCAAGAAGGTGGCAAGATCCTTGCAGAGTTCCCCAATTACAGCATAGAGCTTG 67
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1913 TTGTAAATCAAGAAGGTGGCAAGATCCTTGCAGAGTTCCCC-A--ACAGCATAGAGCTTG 1969
Query 68 GGAAGCTCGGACCCG 82
|||||||||||||||
Sbjct 1970 GGAAGCTCGGACCCG 1984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5