BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891944
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38280.1 | Symbols: PR5K | PR5-like receptor kinase | chr5:1... 1232 0.0
> AT5G38280.1 | Symbols: PR5K | PR5-like receptor kinase | chr5:15293121-15297323
REVERSE LENGTH=2316
Length=2316
Score = 1232 bits (667), Expect = 0.0
Identities = 845/932 (91%), Gaps = 8/932 (1%)
Strand=Plus/Plus
Query 17 CATTGATGTTCCTCCTTGTTTCCCATTTATTCGTCTTAGGAGTAATGTCAAGAAACTTTA 76
|||||||||||||||||||||| ||||| || |||| |||||||||||| ||||||||||
Sbjct 137 CATTGATGTTCCTCCTTGTTTCACATTTCTTTGTCTCAGGAGTAATGTCGAGAAACTTTA 196
Query 77 CTATAGAGAACAAATGCGCTTACACTGTCTGGCCAGGATTCCTAACCATGACTACTGCGG 136
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 197 CTATAGAGAACAAATGCGATTACACTGTCTGGCCGGGATTCCTAACCATGACTACTGCGG 256
Query 137 TTTCGCTACCCACCACCGGCTTCTCCCTTAAGAAAGGGGAGACGCGTGTCATCAATGTGC 196
||||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 257 TTTCGCTCCCCACCAACGGCTTCTCCCTCAAGAAAGGGGAGTCACGTGTCATCAATGTGC 316
Query 197 CATCGTCATGGTCAGGTCGTTTGTGGGGTAGATCGCTT-TGCTCAACCAGCTCAACAGGA 255
|| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 317 CACCGTCATGGTCAGGTCGTTTGTGGGGTAGATCG-TTCTGCTCCACCAGCTCAACAGGG 375
Query 256 AATTTCTCATGTGCCACAGGAGACTGCGGCTCTGGAAAAATTGAGTGCTCTGGA-GGCAC 314
||||||||||||||||| |||||||||||||| |||||||| |||||||| || |
Sbjct 376 AATTTCTCATGTGCCACGGGAGACTGCGGCTCCGGAAAAATCGAGTGCTC-CGATTCCGG 434
Query 315 AGC-AGCGCTTCCAACAACGCTAATCGATTTTACCCTCGACGGTTCCAAAGGTCAAGACT 373
||| || || ||| || |||||||| ||||||||||| |||| | || | ||||||||||
Sbjct 435 AGCAAG-GCCTCCTACGACGCTAATTGATTTTACCCTTGACGCTACCGACGGTCAAGACT 493
Query 374 TCTACGATGTAAGCGTTGTGGATGGTTACAACCTTCCGTTGGTTGTAGTCCCACAGGGTT 433
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |
Sbjct 494 TCTACGATGTAAGCGTCGTGGATGGTTACAACCTTCCGTTGGTTGTGGTCCCACAACG-T 552
Query 434 C-AGGGAGAGGCCGGGCATGCATCAGCATCGGTTGCGTGGTCAACCTGAACGAGACGTGT 492
| |||||| |||||| |||| | || | | ||||| ||||| ||| ||||| |||| |||
Sbjct 553 CTAGGGAGTGGCCGGACATGTAGCAACGTTGGTTGTGTGGTTAACTTGAACAAGACTTGT 612
Query 493 CCGTCGGAGCTTAAGGTGATGGGAAGCTCTGACAAGGAACATCCCATCGCTTGCATGAAC 552
|||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 613 CCGTCGGAGCTTAAAGTGATGGGAAGCTCTAACAAGGAACATCCCATTGCTTGCATGAAC 672
Query 553 GCTTGTGAAAAATTCCGGTTGCCGGAGTTCTGCTGCTACGGTGAGTACGGCACACCTGAA 612
|||||| | |||||| |||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 673 GCTTGTCAGAAATTCGGGTTGCCGGAGTTCTGCTGCTACGGTGAGTACGGTAAACCTGCA 732
Query 613 AAATGCCAACCGACGCTTTACTCGAAGAATTTCAAGAACGATTGTCCACTCGCTTATAGC 672
||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 733 AAATGTCAACCGACGCTTTACTCTACGAATTTCAAGAACGAGTGTCCACTCGCTTATAGC 792
Query 673 TATGCTTATGACAATGAAAACAGCACATTCACATGCTCAAACTCACCTAACTACGTCATC 732
|||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||||||
Sbjct 793 TATGCTTATGACAATGAAAACAACACCTTCAGATGCTCAAACTCACCTAACTATGTCATC 852
Query 733 ACCTTTTGCCCCAACGACATAAGCTCAGCGTCTCAACCATCCAAGGAAACTAATGGAGGA 792
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 853 ACCTTTTGCCCCAACGACATAAGTTCAATGTCTCAACCATCCAAGGAAACTAATGGAGGA 912
Query 793 ACAAAACAAAAATCATCATGGAAGTTAAAACTCATACTTGGAGTCTCAGCAGCTTTAACC 852
|| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 913 ACGAAACAAAAGTCATCATGGAAGTTAAAACTCATAGTTGGAGTCTCAGCAGCTTTGACC 972
Query 853 ATGATGATCATAATTGTGGTCTTAATAATTGTGAGAGCAAAGAATGTGAGAAATAGTGAT 912
|||||||| ||||||||||| ||||||| |||||| |||||||| |||||||||||||
Sbjct 973 CTGATGATCTTAATTGTGGTCGTAATAATAGTGAGAACAAAGAATATGAGAAATAGTGAG 1032
Query 913 TGGAATGATCAGAACGTTGAAGCAGTTGCAAT 944
||||||||||||||||||||||||||||||||
Sbjct 1033 TGGAATGATCAGAACGTTGAAGCAGTTGCAAT 1064
Score = 84.2 bits (45), Expect = 2e-15
Identities = 58/64 (91%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 949 TTTGGAAGTGATACTCTCTTA-ACTAGTGAAGATGCTTTACAACATGGGTCAAGGTCCTC 1007
|||| ||| | |||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 2050 TTTGAAAGAGGTACTCTCTTAGA-TAGTGAAGATGTTTTACAACATGGGTCAAGGTCCTC 2108
Query 1008 CTAA 1011
||||
Sbjct 2109 CTAA 2112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5