BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891948

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27650.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein | ...  71.3    3e-12


> AT5G27650.1 | Symbols:  | Tudor/PWWP/MBT superfamily protein 
| chr5:9785407-9789232 FORWARD LENGTH=3461
Length=3461

 Score = 71.3 bits (38),  Expect = 3e-12
 Identities = 42/44 (95%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  1    ATGCTGAGATTGCTCAACAAACGGATTCGATTCAGGATCCTAAG  44
            |||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  142  ATGCTGTGATTGTTCAACAAACGGATTCGATTCAGGATCCTAAG  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7595504001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5