BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891959
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16590.1 | Symbols: LRR1 | Leucine-rich repeat protein kinas... 671 0.0
AT3G02880.1 | Symbols: | Leucine-rich repeat protein kinase fa... 257 6e-68
> AT5G16590.1 | Symbols: LRR1 | Leucine-rich repeat protein kinase
family protein | chr5:5431681-5434134 FORWARD LENGTH=2272
Length=2272
Score = 671 bits (363), Expect = 0.0
Identities = 444/483 (92%), Gaps = 6/483 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAACACGACCAACTTAAGct-tctctgtcttcttctttctct-tctgtctCATTT 58
|||||||||| |||||| || || | |||| ||||||||| |||| | | |||||| |||
Sbjct 182 ATGAAGAACAAGACCAA-TTTAGGTCTCTCAGTCTTCTTC-TTCTTTATATGTCTCGTTT 239
Query 59 CCGTAACATCAGATCTAGAAGCTGATCGACGAGCAT-TAATAGCTCTCCGTGATGGTGTC 117
|||| ||||||||||||||||||||||||||||| | |||| || || ||||| |||||
Sbjct 240 CCGTGACATCAGATCTAGAAGCTGATCGACGAGC-TCTAATCGCACTTCGTGACGGTGTT 298
Query 118 CATGGCCGTCCATTGCTCTGGAATTTATCAGCACCACCGTGTACTTGGGGAGGAGTCCAA 177
||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 299 CATGGGCGTCCATTGCTGTGGAATCTAACAGCACCACCGTGTACTTGGGGAGGAGTCCAA 358
Query 178 TGTGATTCGGGTCGGGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCTGGTCCATTA 237
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 TGTGAGTCGGGTCGTGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCGGGTCCATTA 418
Query 238 CCAATCGCCATCGGAAACCTAACAAAGCTCGAAACTTTATCTTTCCGATTCAATGCTCTT 297
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 419 CCAATCGCCATCGGAAACCTTACAAAGCTCGAAACTTTATCATTCCGATTCAATGCTCTT 478
Query 298 AATGGTCCTCTCCCGCCGGATTTCGCTAACCTAACTCTCCTCCGATACTTGTATCTTCAA 357
|| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 479 AACGGTCCTCTCCCGCCGGATTTCGCAAACCTAACTCTTCTCCGTTACTTGTATCTTCAA 538
Query 358 GGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTTTACCAAACATTATTCGG 417
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 GGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTCTACCAAACATTATTCGG 598
Query 418 ATCAATCTCGCTCAAAACAATTTCTCGGGTCGGATCCCGGATAATGTCAATTCAGCGACC 477
||||||||||| || || ||||||| ||||||||||||||||||||||||||| || |||
Sbjct 599 ATCAATCTCGCCCAGAATAATTTCTTGGGTCGGATCCCGGATAATGTCAATTCTGCAACC 658
Query 478 CGG 480
|||
Sbjct 659 CGG 661
> AT3G02880.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:634653-637284 FORWARD LENGTH=2352
Length=2352
Score = 257 bits (139), Expect = 6e-68
Identities = 362/467 (78%), Gaps = 26/467 (6%)
Strand=Plus/Plus
Query 30 tgtcttcttctttctcttctgtctCATTTCCGTAACATCAGATCTAGAAG-CTGATC-GA 87
||||||| ||||| |||||| |||| | | || || |||||||||| || |||| | ||
Sbjct 199 TGTCTTCCTCTTTGTCTTCTATCTCGCTGCGGTGACTTCAGATCTAG-AGTCTGACCGGA 257
Query 88 CGAGCATTAATAGCTCTCCGTGATGGTGTCCATGGCCGTCCATTGCTCTGGAA-TTTA-T 145
|||| ||| | ||| | ||| | |||||| ||||||||| ||||| ||||| | | |
Sbjct 258 -GAGCTTTACTCGCTGTTCGTAACAGTGTCCGTGGCCGTCCTTTGCTATGGAACATGAGT 316
Query 146 -CAGCACCACCGTGTACTTGGGGA-GGAGTCCAATGTGATTCGGGTCGGGTCACAGCACT 203
| | | || |||| || || | |||||||| || ||| ||||||||||||| || ||
Sbjct 317 GCTTCTTCTCCTTGTAATT-GGCACGGAGTCCACTGCGATGCGGGTCGGGTCACGGCTCT 375
Query 204 CCGATTACCCGG-TGTGGGTTTA-TCTGGTCCATTACCAATC---GCCATCGGAAACCTA 258
|||||||||||| | | |||||| || ||| | ||||||||| | || || || |||
Sbjct 376 CCGATTACCCGGATCT-GGTTTATTC-GGTTCTTTACCAATCGGTGGTATTGGTAATCTA 433
Query 259 ACAAAGCTCGAA-ACT-TTATCTTTCCGATTCAATGCTCT-TAATGGTCCTCTCCCGCCG 315
|| |||| || ||| || ||| |||| |||||| |||| | ||||||| |||| ||
Sbjct 434 ACCCAGCT-TAAGACTCTT-TCTCTCCGGTTCAATTCTCTCT-CTGGTCCTATCCCTTCG 490
Query 316 GATTTCGCTAACCTAACTCTCCTCCGATACTTGTATCTTCAAGGAAACGCATTTTCCGGC 375
|||||| | ||||| ||||||||| ||||||||||||||||| || || ||||||||
Sbjct 491 GATTTCTCCAACCTTGTTCTCCTCCGTTACTTGTATCTTCAAGGTAATGCCTTTTCCGGT 550
Query 376 GAGATTCCTTCGTTTCTCTTCAC-TTTACCAAACATTATTC-GGATCAATCTCGCTCAAA 433
|||||||| ||| |||||||||| || || | || || || | |||||||| | | |
Sbjct 551 GAGATTCCGTCGCTTCTCTTCACGCTT-CCGAGCA-TAATCAGAATCAATCTAGGGGAGA 608
Query 434 ACAATTTCTCGGGTCGGATCCCGGATAATGTCAATTCAGCGACCCGG 480
| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 609 ATAAATTCTCGGGTCGGATCCCGGATAATGTCAATTCTGCGACCCGG 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5