BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891979
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 606 4e-173
> AT5G38060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G65000.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15189444-15190132
FORWARD LENGTH=619
Length=619
Score = 606 bits (328), Expect = 4e-173
Identities = 382/407 (94%), Gaps = 7/407 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCAAGCTTTACTAAATCTTCAAG--TTC--CTCCTTCTTTCTCAATCCCCAAAAC 56
||||||||||||||||||||| ||| || ||| || ||||||||||||||||||||||
Sbjct 47 ATGTCTCAAGCTTTACTAAATTTTC-AGCTTTCTTCTTCTTCTTTCTCAATCCCCAAAAC 105
Query 57 CCTAATTCACTCTCACTCCCTCAAAACCTT-AAAGAAACCTAAACTAAACTCACGAAAAT 115
|||||||||||||||||| ||||||||||| ||| | || ||||||||||||||| |||
Sbjct 106 CCTAATTCACTCTCACTCTCTCAAAACCTTGAAA-ACCCCGAAACTAAACTCACGACAAT 164
Query 116 TCCTCTTACAATGCTCAGTTTCTTCTTCCGACAGACCCAAAACCTTAAGAACTTGCAAAA 175
|| ||| ||||||| ||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 165 TCTTCTCACAATGCACAGCTTCTTCTTCCGATGGACCCAAAACCTTAAGAACTTGCAAAA 224
Query 176 ACTGCAAAACCCAATTCGATCCTCTCCTCAATAACCCACGCGCTTGTAGATTCCACACTG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ACTGCAAAACCCAATTCGATCCTCTCCTCAATAACCCACGCGCTTGTAGATTCCACACTG 284
Query 236 CTCATTTCGGAGGTGAGACGAAGAGGAAATTTGAGAGTGTATATACTGGTGGAACAATGG 295
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 285 CTCATTTCGGAGGTGAGACAAAGAGGAAATTTGAGAGTGTATATACAGGTGGAACAATGG 344
Query 296 ATACACCAAATTCTGGAAAAGTATTACAATATTGGCATTGTTGTGGCTCTGAAGATCCTT 355
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 345 ATACACCAAATTCTGGAAAAGTGTTACAATATTGGCATTGTTGTGGTTCTGAAGATCCTT 404
Query 356 TTGATTCTGGTTGTACTGCTTCTCCTCATGCAACATATGATGATTGA 402
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 405 TTGATTCTGGTTGTACTGCTTCTCCTCATACAACATATGATGATTGA 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001209122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5