BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891979 Length=402 Score E Sequences producing significant alignments: (Bits) Value AT5G38060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 606 4e-173 > AT5G38060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15189444-15190132 FORWARD LENGTH=619 Length=619 Score = 606 bits (328), Expect = 4e-173 Identities = 382/407 (94%), Gaps = 7/407 (2%) Strand=Plus/Plus Query 1 ATGTCTCAAGCTTTACTAAATCTTCAAG--TTC--CTCCTTCTTTCTCAATCCCCAAAAC 56 ||||||||||||||||||||| ||| || ||| || |||||||||||||||||||||| Sbjct 47 ATGTCTCAAGCTTTACTAAATTTTC-AGCTTTCTTCTTCTTCTTTCTCAATCCCCAAAAC 105 Query 57 CCTAATTCACTCTCACTCCCTCAAAACCTT-AAAGAAACCTAAACTAAACTCACGAAAAT 115 |||||||||||||||||| ||||||||||| ||| | || ||||||||||||||| ||| Sbjct 106 CCTAATTCACTCTCACTCTCTCAAAACCTTGAAA-ACCCCGAAACTAAACTCACGACAAT 164 Query 116 TCCTCTTACAATGCTCAGTTTCTTCTTCCGACAGACCCAAAACCTTAAGAACTTGCAAAA 175 || ||| ||||||| ||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 165 TCTTCTCACAATGCACAGCTTCTTCTTCCGATGGACCCAAAACCTTAAGAACTTGCAAAA 224 Query 176 ACTGCAAAACCCAATTCGATCCTCTCCTCAATAACCCACGCGCTTGTAGATTCCACACTG 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 ACTGCAAAACCCAATTCGATCCTCTCCTCAATAACCCACGCGCTTGTAGATTCCACACTG 284 Query 236 CTCATTTCGGAGGTGAGACGAAGAGGAAATTTGAGAGTGTATATACTGGTGGAACAATGG 295 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 285 CTCATTTCGGAGGTGAGACAAAGAGGAAATTTGAGAGTGTATATACAGGTGGAACAATGG 344 Query 296 ATACACCAAATTCTGGAAAAGTATTACAATATTGGCATTGTTGTGGCTCTGAAGATCCTT 355 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 345 ATACACCAAATTCTGGAAAAGTGTTACAATATTGGCATTGTTGTGGTTCTGAAGATCCTT 404 Query 356 TTGATTCTGGTTGTACTGCTTCTCCTCATGCAACATATGATGATTGA 402 ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 405 TTGATTCTGGTTGTACTGCTTCTCCTCATACAACATATGATGATTGA 451 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19001209122 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5