BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891996

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43470.1 | Symbols:  | Protein of unknown function (DUF3755)...   180    1e-44


> AT2G43470.1 | Symbols:  | Protein of unknown function (DUF3755) 
| chr2:18049858-18051218 REVERSE LENGTH=719
Length=719

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 139/158 (88%), Gaps = 7/158 (4%)
 Strand=Plus/Plus

Query  306  CACAGAAAACTTGGACCTTTTCAGCAAAATTCGGGAGAACATCAATAGCCTTCTCAAAAA  365
            |||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||||| |
Sbjct  453  CACAGACAACTTAGACCTTTTCAGAAAAATCCGGGAGAACATCAAAAGCCTTCTCAAAGA  512

Query  366  TTTGAATGAGAATGTGTCGGAGACATGGAAGCAA-ATGCCA-C--CATTGCCGGAGAAGT  421
            ||||||||||||||||||||||||||||||| || |||||| |  |||||||||||||||
Sbjct  513  TTTGAATGAGAATGTGTCGGAGACATGGAAG-AATATGCCATCATCATTGCCGGAGAAGT  571

Query  422  TGAACGATGAGCTCTTT-TGTGATCTCTATAAAGCAAT  458
            |||||||||| || ||| | ||  ||  ||||||||||
Sbjct  572  TGAACGATGAACTATTTCT-TGGCCTAGATAAAGCAAT  608



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5