BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892007

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02000.1 | Symbols:  | unknown protein; Has 5 Blast hits to ...   484    2e-136


> AT5G02000.1 | Symbols:  | unknown protein; Has 5 Blast hits to 
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr5:380155-380595 REVERSE LENGTH=441
Length=441

 Score =  484 bits (262),  Expect = 2e-136
 Identities = 307/328 (94%), Gaps = 5/328 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGAATGAGGTGCGATGGATGAATGAAGTGTCGTCCGATAGCAGCAACGATGGTGAA  60
            |||||||| |||||| ||||||||||||||| ||||   |||||||||||| ||||||||
Sbjct  1    ATGGAGAACGAGGTGGGATGGATGAATGAAGCGTCGAAGGATAGCAGCAACAATGGTGAA  60

Query  61   TCTTTCATTGAAATAAAAATCAACAAACCAGTCACAGA-CACAGGATTGAGCATCTCTTC  119
            ||||||||||||||| ||||||||||| |||||| | | |||||||||||||||||||||
Sbjct  61   TCTTTCATTGAAATACAAATCAACAAAGCAGTCAGA-ACCACAGGATTGAGCATCTCTTC  119

Query  120  TTCGCCATCTCCCGATAACGAAATGC--A-GACGACAGCAATCTTCTCATCGGCGTCTAG  176
            ||||||||||||||| ||||||||||  | ||||||||||||||||||||||||  ||||
Sbjct  120  TTCGCCATCTCCCGAGAACGAAATGCAGACGACGACAGCAATCTTCTCATCGGCCACTAG  179

Query  177  TTGCTTCTCTGCATACAGCAACGTGACGAGGTTGATGATGAAAGTGGGGTGTTTGAGTAT  236
            ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  180  TTGCTTCTCAGCATACAGCAGCGTGACGAGGTTGATGATGAAAGTGGGGTGTTTGAGTAT  239

Query  237  AGTGGGAGTCATAAGAGAGAAAGTGAACGTGGGAGAGAGGTGGGTCCTCCAAGTTATACA  296
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  240  AGTGGGAGTCATAAGAGAGAAAGTAAACGTGGGAGAGAGGTGGGTCCTCCAAGTTATACA  299

Query  297  GAGACGACGAAACAAGAGCCCCCTACGA  324
            ||||||||||||||||||||||||||||
Sbjct  300  GAGACGACGAAACAAGAGCCCCCTACGA  327



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5