BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892013
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01940.1 | Symbols: | eukaryotic translation initiation fac... 942 0.0
> AT5G01940.1 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein | chr5:363594-364769
REVERSE LENGTH=696
Length=696
Score = 942 bits (510), Expect = 0.0
Identities = 617/668 (92%), Gaps = 9/668 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTACAGCAAAAGCAGGCTTGTTGGAATGTTGAACTCGAGGTTTTAGATAACGAT 60
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1 ATGGATTTACAGCAAAAGCAGGCGTGTTGGAAACTTGAACTCGAGGTTATAGATAACGAT 60
Query 61 TCTTCATGGGTCAGTAAATTTGATCCTTCCAAGAATAAGAAGAAGAAG-AG--GAAGCCT 117
||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||
Sbjct 61 TCTTCATGGGTCAGTAAATTTGATCCTTCTAAGAAGAAGAAGAAGAAGAAGCAGAAGCCT 120
Query 118 CTGATACGCGAAGACGACATCTTCTTCCAGAAAGGAGGAGACTTTACCGAGGATAACGCT 177
|||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
Sbjct 121 CTGATACGCGAAGACGACATCTTCTTCCAGAATGGAGGACACTTTACGGAGGATAAC-TT 179
Query 178 -CCACACTGTCAATCTGGCCGGAACTTTGAGCCAGACTATGGCTACAAAGAGCTCTTGAG 236
|| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 180 ACCGGACTGTCAATCTAGCCGGAAATTTGAGCCAGATTATGGCTACAAAGAGCTCTTGAG 239
Query 237 TATGGTGTTTAATAGGCTTCGTGACGAAGATCTCGAGGTTTCAACAGAGAGGCCAAGAAC 296
|||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 240 TATGGTGTTTGATAGGCTTCGTGAGGAAGATGTCGAGGTTTCTACAGAGAGGCCAAGAAC 299
Query 297 AGTGATGATGCCTCCTCGGCTCCTTGCACAAGGGACTATAACACTTTGTTTAAACTTTGC 356
||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 300 AGTGATGATGCCTCCTCAGCTCCTTGCAGAAGGGACGATAACTGTTTGTTTAAACTTTGC 359
Query 357 TGATCTCTGCACAACGATGCATAGGAAGCCAGATCATGTCATGAAATTCTTACTTGCCCA 416
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGATCTCTGCAGAACGATGCATAGGAAGCCAGATCATGTCATGAAATTCTTACTTGCCCA 419
Query 417 AATGAAGACAAAAGGATCGCTGAATAAACAACAGCGGCTAGAGATGAAGGGTTTAGTGTC 476
|||| ||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 420 AATGGAGACAAAAGTATCGCTGAACAAACAGCAGCGGCTAGAGATTAAGGGTTTAGTGTC 479
Query 477 TTCTAAGGTTTTTCAAGCTGTGTTCCGGAAATACATTGATGCGTTCGTAATCTGCATCTG 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 TTCTAAGGATTTTCAAGCTGTGTTCCGGAAATACATTGATGCGTTCGTAATCTGCGTCTG 539
Query 537 CTGCAAAAGTCCTGACACATCTCTTGCGGAGGAGGACAATGGTCTTTTTAATCTCAGATG 596
||||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||
Sbjct 540 CTGCAAAAGTCCTGACACAGCTCTCGCGGAGGAGGGCAATGGTCTTTTCAATCTCAGATG 599
Query 597 TGAGATGTATAAA-ATGACACTGATAAATTGGTCTCATTTGGGTCTGTTCTTGTGCAGTG 655
||||| | ||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 600 TGAGACGGGGAAAGATGAG---GATAAATTGGTCTCATTTGAGTCTGTTCTTGTGCAGTG 656
Query 656 TGGTTTAG 663
||||||||
Sbjct 657 TGGTTTAG 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5