BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892017
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01900.1 | Symbols: WRKY62, ATWRKY62 | WRKY DNA-binding prot... 1160 0.0
> AT5G01900.1 | Symbols: WRKY62, ATWRKY62 | WRKY DNA-binding protein
62 | chr5:351008-352069 REVERSE LENGTH=976
Length=976
Score = 1160 bits (628), Expect = 0.0
Identities = 741/795 (93%), Gaps = 9/795 (1%)
Strand=Plus/Plus
Query 1 ATGAACTCTTGCCAACAAAAGGCAATGGAGAAACTACTTCGCGGGCGCAGGTGCGCTAAC 60
||||||||||||||||||||||| |||||||| | |||| ||||| ||||||| |||
Sbjct 57 ATGAACTCTTGCCAACAAAAGGCTATGGAGAAGTTGCTTCACGGGCATGGGTGCGCCAAC 116
Query 61 CAGCTGCTCATTATGGACCACACCGAGTCAGACTCGTCCATGGAAAGGGAAGATTTGGCC 120
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 117 CAGCTGCTCATCATGGACCAGACCGAGTCAGACTCGTCCATGGAAAGGGAGGATTTGGCC 176
Query 121 AAGTCCGTCCTCCATTGTTTCTCAGATTCTCTCTCCATCTTGATCGATACTAATGACCAC 180
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 177 AAGTCCGTCCTCCATTGTTTCTCAGATGCGCTCTCCATCTTGATCGATACTAATGACCAC 236
Query 181 CAAGACGATCAATCCAATAACTCATCCCCTCAGGACTCTTCTCCTGTTCTTGAGAGCGCC 240
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 237 CAAGACGATCAATCCAATAACTCATCTCCTCAGGACTCTTCTCCTGTGCTTGAGAGCTCC 296
Query 241 AGGAAACCACTTCACAAGAGGGGAAGAAAGACATCAATGGCAGAGAGCTCAGACTACCAT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 297 AGGAAACCACTTCACAAGAGGGGAAGAAAGACATCTATGGCAGAGAGCTCAGACTACCAT 356
Query 301 AGACGCGAATCCTCAACCCCTATCTACCACGACGGCTTCCTCTGGAGGAAATACGGACAA 360
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGACACGAATCTTCAACCCCGATCTACCACGACGGCTTCCTCTGGAGGAAATACGGACAA 416
Query 361 AAGCAGATCAAAGAATCTGAGTACCAAAGGAGTTACTACAAGTGTGCCTACACAAAGGAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 AAGCAGATCAAAGAATCTGAGTACCAAAGGAGTTACTACAAGTGTGCCTACACCAAGGAC 476
Query 421 CAGAACTGTGAAGCAAAGAAGCAGGTTCAAAAGATCCAACACAATCCTCCATTGTACTCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAGAACTGTGAAGCAAAGAAGCAGGTTCAAAAGATCCAACACAATCCTCCATTGTACTCA 536
Query 481 ACCACTTACTTCGGCCAACACACATGCCAGCTTCATCAAGCTTATGCAACTTTCCCCATT 540
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 ACCACTTACTTCGGCCAGCACATATGCCAGCTTCATCAAGCTTATGCAACTTTCCCCATT 596
Query 541 GACACCTCTGACA-CTGAAGAGCACGACGGATCCCACATGATCCGATTCGGTCACCC-AG 598
||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 597 GACACATCTGACTTC-GAAGAGCACGAGGGATCCCACATGATCCGATTCGGTCACCCCAA 655
Query 599 CCACCAGCTTCTTCGCCTCCACCCCTAGCCTCAGTCAACATCAGAATCA---GGATCACG 655
| | |||||||| | |||||||| ||| |||| | |||||||||||||| ||||| |
Sbjct 656 C-ATCAGCTTCTCCTCCTCCACCTCTAACCTCCGCCAACATCAGAATCATCAGGATCGCA 714
Query 656 TCAAAGATGATTACATGAAACCGGTGATAGCAGAAGAGTGGGT-TCCATCCGAGTGGATG 714
|||||||||| |||||||||||||||||||||||||| ||| | ||||||| ||||||||
Sbjct 715 TCAAAGATGAATACATGAAACCGGTGATAGCAGAAGATTGG-TCTCCATCCCAGTGGATG 773
Query 715 TCGTCCGAGGTTGCCCACGCGGTGGAGGCTTTCGAGTTTAACCCTTTATGGACATCTCAT 774
|||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 774 TCGTCCGAGGTTGCCCTCGCCGTGGAGGCTTTCGAGTTTAATCCTTTCTGGACATCTCAC 833
Query 775 GACTTATCATCATGA 789
|||||||||||||||
Sbjct 834 GACTTATCATCATGA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5