BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892021

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01870.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   466    6e-131


> AT5G01870.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:337177-337820 
FORWARD LENGTH=550
Length=550

 Score =  466 bits (252),  Expect = 6e-131
 Identities = 319/352 (91%), Gaps = 2/352 (1%)
 Strand=Plus/Plus

Query  1    ATGATGAGAGTTGTGTTACCGCTATGCCTGCTTCTTGCTTCCATGTTTGCAAGAGGTTCT  60
            |||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||
Sbjct  58   ATGATGAGAGTTGTGTTACCACTATGCCTGCTTCTTGCTTCCATATTTGCATGGGGTTCT  117

Query  61   GAAGCAGCCGTGTCTTGCAACGCGGTACAGGCCGACCTTTACCCGTGCCTTGCGTACGTG  120
            ||||||||| | ||||||||||| ||||||||| |||||||||||||| ||| |||||||
Sbjct  118  GAAGCAGCCATATCTTGCAACGCCGTACAGGCCAACCTTTACCCGTGCGTTGTGTACGTG  177

Query  121  GTGCAGGGAGGAAACATTCCGCAAAGCTGTTGCACGGGCATCAGGATGCTCAAGC-AACA  179
            ||||||||||||  ||||||| | ||||||||||  ||||||||||||||| ||| ||||
Sbjct  178  GTGCAGGGAGGAGCCATTCCGTATAGCTGTTGCAATGGCATCAGGATGCTC-AGCAAACA  236

Query  180  GGCAAAGAGCGCATCAGATAGGCAAGTTGTGTGTCGCTGCATCAAGTCTGCGGTGGGAAG  239
            |||||  ||||||||||| |  |||| ||||||||||||||||||||||| |||||||||
Sbjct  237  GGCAACTAGCGCATCAGACAAACAAGGTGTGTGTCGCTGCATCAAGTCTGTGGTGGGAAG  296

Query  240  AGTGTCATACTCGTCAACCTATCTCAAGAATGCTGCCACTTTGCCAGGCAAGTGCGGTGT  299
            |||||| |||||||||| |||||||||||| |||||  ||||||||||||||||||||||
Sbjct  297  AGTGTCTTACTCGTCAATCTATCTCAAGAAAGCTGCTGCTTTGCCAGGCAAGTGCGGTGT  356

Query  300  CAAACTTCCATACAATATCGACCCTTCCACCAACTGCAACAGCATTAAATGA  351
            ||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct  357  CAAACTTCCTTACAAGATCGACCCTTCCACCAACTGCAACAGCATTAAGTGA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5