BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892040
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01690.1 | Symbols: ATCHX27, CHX27 | cation/H+ exchanger 27 ... 2032 0.0
> AT5G01690.1 | Symbols: ATCHX27, CHX27 | cation/H+ exchanger 27
| chr5:257410-260345 FORWARD LENGTH=2238
Length=2238
Score = 2032 bits (1100), Expect = 0.0
Identities = 1175/1212 (97%), Gaps = 2/1212 (0%)
Strand=Plus/Plus
Query 830 TTGCCAAAATGATAGCCATTGCCTTGCCTTCCCTTTACTATAATGTGCCTCTTTGGCAGG 889
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1028 TTGCCAAAATGATAGCCATTGCCTTGCCTTCCCTTTACTATAAAGTGCCTCTTTGGCACG 1087
Query 890 CCATTCTTGTCGGGTTTATCGTCAATATCCAAGGACTTTACGACGTTCAAATATACAAAC 949
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1088 CCATTCTTGTCGGGTTTATCGTCAATATACAAGGACTTTACGACGTTCAAATATACAAAC 1147
Query 950 AGAATCTCAATTACACGAAAATATCAAGCAAATCTTTTGGAGCAATGGTGATGTCAGCAA 1009
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 AGAATTTCAATTACACGAAAATATCAAGCAAATCTTTTGGAGCAATGGTGATGTCAGCAA 1207
Query 1010 CGGTAAACTCAACAATTGTCATAGTGATAGTGAAGAAACTGTATCAAACCATGAGCAAAC 1069
|||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1208 CGGTAAACTCGACAATTTTCATAGTGATAGTGAAGAAACTGTACCAAACCATGAGCAAAC 1267
Query 1070 GCAACCCATACAAGAGACGTACGGTGCAGCACTGCCGAGTGGGGGCTCCGCTAAGGATCC 1129
||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 1268 GCAACCCTTACAAGAGACGTACGGTGCAACACTGCCGAGTGGAGGCTCCCCTAAGGATCC 1327
Query 1130 TCACTTGTTTCCGGAACCGTGAGGCGGTCCGCCCGGTGCTTGACCTCGTCGAACTCTCTC 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TCACTTGTTTCCGGAACCGTGAGGCGGTCCGCCCGGTGCTTGACCTCGTCGAACTCTCTC 1387
Query 1190 GTCCAGCCATCGGGTCTCCTCTCTCAGTCTTCGCTGTGAATCTAGAAGAGCTTAATAACC 1249
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1388 GTCCAGCCATCGGGTCTCCTCTCTCAGTCTTCGCGGTGAATCTAGAAGAGCTTAATAACC 1447
Query 1250 ATAGTCTTCCTCTCCTTATTCATCACACGCAAGAGATTAGTCCCTTCATCGTGCCTAGCC 1309
|||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1448 ATAGTCTTCCCCTCCTTATCCATCACACGCAAGAGATTAGTCCCTTCCTCGTGCCTAGCC 1507
Query 1310 GAAGAGACCAGATTGTTAAGGCCTTCCACAACTTCGAGAAGACTAATCAGGAGACCGTGT 1369
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GAAGGGACCAGATCGTTAAGGCCTTCCACAACTTCGAGAAGACTAATCAGGAGACCGTGT 1567
Query 1370 TGATAGAGTGCTTCACGGCAGTGGCGCCGCGAAAGACGATGCACGAGGATGTGTGTGCGA 1429
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1568 TGATAGAGTGCTTCACGGCAGTGGCACCGCGAAAGACGATGCACGAGGACGTGTGTGCGA 1627
Query 1430 TTGCCTTTGACCAGGAAACAGATATTGTGATCCTAACTCTTGATGCCGGGATAGAGTCAT 1489
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1628 TTGCCTTTGACCAGGAAACAGATATTGTGATCCTAACTCTTGATGCCGGGATCGAGTTAT 1687
Query 1490 GGGAGAGGCTCCTGTGTCGTAATCTCCTGCAAAACTGTCCCTGCTCCGTTGCGCTTTTCA 1549
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1688 GGGAGAGGCTCCTGTGTCGTAATCTCCTGCACAACTGTCCCTGCTCTGTTGCGCTTTTCA 1747
Query 1550 TAGACAGAGGAAGGCTTCCAGATTTCAGGTTCGTTCCACTGAAAAAGCTCACCATCAATA 1609
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1748 TAGACAGAGGAAGGCTCCCAGATTTCAGGTTCGTTCCACTGAAAAAGCTTACCATCAATA 1807
Query 1610 TCTG-TGCTATCTTCTTAGGAGGACCAGATGACCGTGAAATGCTTGCGTATGCAACACGC 1668
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 T-TGGTGCTATCTTCTTAGGAGGACCAGATGACCGTGAAATGCTTGCGTATGCAACACGC 1866
Query 1669 TTAGCCAGCCATCCAAGCGTCGATCTCCATGTCTTCCGGCTCGTGGACCAGAACGGCGTC 1728
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1867 TTAGCCAGCCATCCAAGCGTCGAGCTCCAAGTCTTCCGGCTCGTGGACCAGAACGGCGTC 1926
Query 1729 TCTCCGCTCAGAGACATGGTCGAGAGGAACCACGACATGAGAGTCATCAACGTCTTCCGC 1788
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1927 TCTCCGCTCAGAGACATGGTCGAGAGGAATCACGACATGAGAGTCATCAACGTCTTCCGC 1986
Query 1789 AAAGAAAATTCCAAGAAAAACATCATCTTCAGAGAGGTAAGAATAGAGGAAGCAGTGGAT 1848
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1987 AAAGAAAATTCCGAGAAAAACATCATCTTCAGAGAGGTAAGAATAGAGGAAGCAGTGAAT 2046
Query 1849 CTATTGGATCTACTAAGGAAGGAAGGAGACGACTTCGATCTGATGATGGTCGGGATAAGA 1908
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2047 CTACTGGATCTACTAAGGAAGGAAGGGGACGACTTCGATCTGATGATGGTCGGGATAAGA 2106
Query 1909 CACGAAGAAAATCTTTTGATGTTGGAAGGATTGTCAGAATGGAGCGATATGAAGGAGTTA 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 CACGAAGAAAATCTTTTGATGTTGGAAGGATTGTCAGAATGGAGCGATATGAAGGAGTTA 2166
Query 1969 GGAGAGGTCGGAGATGTGTTGATCTCCAAAGATCTCGAGCTCTCTGTTTCGGTTCTCGCA 2028
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 GGAGAGGTTGGAGATGTGTTGATCTCCAAAGATCTCGAGCTCTCTGTTTCGGTTCTCGCC 2226
Query 2029 GTCCAGCAATGA 2040
|| |||||||||
Sbjct 2227 GTACAGCAATGA 2238
Score = 1194 bits (646), Expect = 0.0
Identities = 704/733 (96%), Gaps = 0/733 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAATATCACCAAAACTTTTCAGTACGGAGGAGTCGAATGGCTTTGCGAGCCATGG 60
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGGAAAATATAACCAAAACTTTTCAGTACGGAGGAGTTGATTGGCTTTGCGAGCCATGG 60
Query 61 GTTGGTGCAGGCTCCTTGGGGATTGGCCGGGGAGAGAATCCGCTCAAGTTTGCTCTTCCT 120
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAGGTGCAGGCTCTTTGGGGATTGGCCGGGGAGAGAATCCGCTCAAGTTTGCTCTTCCT 120
Query 121 CTTCTTCTCCTTCAGATATCTGTCTTTACCATATTTTCCGTATCTCTTCAGTTTTTTCTC 180
||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 121 CTTCTTCTCCTTCAGATTTCTGTCTTTTCCATATTTTCCGTATCTTTTCAGTTTCTTCTT 180
Query 181 CGGCCTTTCGGAAAATTTGCATTCCTCACTCAGATGCTGGCTGGGATCTGCTTAGGACCG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGCCTTTTGGAAAATTTGCATTCCTCACTCAGATGCTGGCTGGGATCTGCTTAGGACCG 240
Query 241 TCCGTTATAGGACGTAACAAACAGTACATGTCTACATTTTTCTACACGAGAAGCGTGTAC 300
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 241 TCCGTTATAGGACGTAACAAACAGTACATGGCTACATTCTTCTACGCGAGAAGCGTGTAC 300
Query 301 ATAATCGAATCCTTCGAGGCCATATGTTTTCTCTTCATTTGCTACATTACAACATGTCAA 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 ATAATCGAATCCTTCGAGGCCATATGTTTTCTCTTCATTTGCTACATCACAACATGTCAA 360
Query 361 GTAGACACTAGGATGATAAAGAGAGTAGGCAAGTTAGCATTCATAAACGGCATCTTACTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTAGACACTAGGATGATAAAGAGAGTAGGCAAGTTAGCATTCATAAACGGCATCTTACTT 420
Query 421 TTCCTTATACCTTTCGTATGGGGCCAATTCGCAGCCATCTTGATCTCCAAGAGGCTCGGA 480
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 421 TTCCTCATACCTTTCGTATGGGGCCAATTCGCGGCCATCTTGATCTCCAAGAGGCTCAAA 480
Query 481 GGCGGGCCAGCGGGGATCCCTCCCGTGGAGTTCCACCACATAGCGATCGTCGAATCCACA 540
||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 481 AGCGGGCCTGCGGGGATCCCTCCCGTGGAGTTCCACCATGTAGCGATCGTCCAGTCCACA 540
Query 541 ATGTTTTTTCAGGTGGTTTATGGAGTCTTGTCGAGCCTAAAGATGTTGAACACTGAGCCA 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGTTTTTTCAGGTGGTTTACGGAGTCTTGTCGAGCCTAAAGATGTTGAACACTGAGCCA 600
Query 601 GGGAGGTTAGCACTTGCCTCCATGATGGTGCATGACTGCCTCTCATGGTGTTTTTTCATG 660
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GGGAGGTTAGCACTTGCATCCATGATGGTGCATGACTGCCTCTCTTGGTGTTTTTTCATG 660
Query 661 CTTAACATCGCCATTAAACTTAATGTGGACTTACCCAATAAAAATCGCGCTGCTTTCTTG 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 CTTAACATCGCCATTAAACTTAATGTTGACTTACCCAATAAAAATCGCGCTGCTTTCTTG 720
Query 721 TCCGTCTTACAGA 733
|||||||||||||
Sbjct 721 TCCGTCTTACAGA 733
Score = 171 bits (92), Expect = 3e-41
Identities = 97/99 (98%), Gaps = 1/99 (1%)
Strand=Plus/Plus
Query 730 CAG-ATTTGTTGGTTTACCTTACTTCTTTGGTGCGGTCGTCTTAGGTCTAGCCACCCCAA 788
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CAGAATTTGTGGGTTTACCTTACTTCTTTGGTGCGGTCGTCTTAGGTCTAGCCACCCCAA 947
Query 789 AACGTCCGCCTCTAGGCACGGGACTGTCAGACAAAATCG 827
|||||||||||||||||||||||||||||||||||||||
Sbjct 948 AACGTCCGCCTCTAGGCACGGGACTGTCAGACAAAATCG 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101103897630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5