BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892041
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01680.1 | Symbols: ATCHX26, CHX26 | cation/H+ exchanger 26 ... 3387 0.0
> AT5G01680.1 | Symbols: ATCHX26, CHX26 | cation/H+ exchanger 26
| chr5:253996-256640 REVERSE LENGTH=2355
Length=2355
Score = 3387 bits (1834), Expect = 0.0
Identities = 2202/2376 (93%), Gaps = 39/2376 (2%)
Strand=Plus/Plus
Query 1 ATGAACAATAGTGTT---AGAAATGGAACACATGAATTTGTATGTGAGGCATGGTTGGGT 57
||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAACAATAGTGTTACAAGTAATGGCACACATGAATTTGTATGCGAGGCATGGTTGGGA 60
Query 58 TCAAGCTCTGGCGGATTACTTAGAGGAGATGATCCATTGAAATATTCGActcctcttctt 117
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCAAGCTCTGGCGGATTACTTAGAGGAGATGATCCATTGAAATATTCAACTCCTCTTCTT 120
Query 118 cttcttctcatttctctcgtctcttctctctcttccgtcttccaagctcttctccgtcct 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CTTCTTCTCATTTCTCTCGTCTCTTCTCTCTCTTCCGTCTTCCAAGCTCTTCTCCGCCCT 180
Query 178 ctcGCTAATGTCGACTTTGTCACTCAAATTCTGGCTGGGATATTCTTAGGCCCCTCGGCT 237
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CTCGCAAATGTCGACTTCGTCACTCAAATTCTGGCTGGGATATTCTTAGGACCCTCGGCT 240
Query 238 TTGGGACAGAACATTGATTTAGTAACAAAATTCTTCAACACAAGAAGCT-TCTTCATAAT 296
|||||||| |||||||||||||||| |||||| |||||||||||||||| | ||||||||
Sbjct 241 TTGGGACAAAACATTGATTTAGTAAAAAAATTATTCAACACAAGAAGCTAT-TTCATAAT 299
Query 297 AGAATCATTTGAGGCAATCTCCTTCATGTTCATCTCATACATAAGCACAGCTCAAGTGGA 356
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 AGAATCATTTGAGGCAATATCCTTCATGTTCATCTCATACATAAGCACGGCTCAAGTGGA 359
Query 357 CATGGGAGTTATAAAGCGAGGAGGCAAGCTCGCAATCATCAATGGTTTCTCTCTTTTTCT 416
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 360 CATGGGAGTTATAAAGCGAGGAGGCAAGCTAGCAATCATCAATGGATTATCTCTTTTTCT 419
Query 417 GTTTCCTTACGTGGTGGGCGCCATAGCATGTACAGTAATCACGAGCAACATCCGTGGAAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTCCTTACGTGGTGGGCGCCATAGCATGTACAGTAATCACGAGCAACATCCGTGGAAC 479
Query 477 CGTGGCGAAAAATAAGCCCGAGCAGCTCCACGATTTACTGACAAACCAATCCGTAGTGTA 536
||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 480 CGTGGCGAAAAATAATCCCGAGCAGCTCCACAATTTACTAACAAACCAATCCGTAGTGTA 539
Query 537 TTTTCAAGTGGCGTATTCGGTTTTGTCAAATCTCAAGATGCTAAACTCGGAGCCCGGAAG 596
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 540 TTTTCAAGTGGCGTATTCGGTTTTGTCGAATCTCAAGATGCTGAACTCGGAGCCCGGAAG 599
Query 597 GTTAGCCCTATCCTCCATAATGGTGGCTAACTGCTTCGGCTGGGGTTTTTTCCTCCTTTT 656
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTAGCCCTCTCCTCCATAATGGTGGCTAACTGCTTCGGCTGGGGTTTTTTCCTCCTTTT 659
Query 657 AATTACCTTTAATAGTTTCTTGCAACACAATTACTCCAAGGCCACTTATATGCCTACCTT 716
||||||||| | ||||||||||| || |||||||||||| |||||||| ||||||||||
Sbjct 660 GATTACCTTTGACAGTTTCTTGCATCAAAATTACTCCAAGACCACTTATCTGCCTACCTT 719
Query 717 CACAAAGGTACTACTGCTTGTTGGTATAGTAGTTGTGAGCCGACCAATATTCAACTGGAT 776
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 CACAAAGGTACTACTGCTGGTTGGTATAGTAGTTGTGTGCCGACCAATATTCAACTGGAT 779
Query 777 AGTGAAGAGAACATCTGAAGGAAAGAAACTGAAGGCTTCCCATCTATGCACCATCTGCGT 836
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 780 AGTGAAGAGAACCCCTGAAGGAAAGAAACTCAAGGCTTCCCATCTATGCACCATTTGCGT 839
Query 837 CATGTTGTGCACCGCTACTTTCCTGGCTGAAACCGTAGGGTTTCCTTACATAGTCGGATC 896
||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 840 CATGTTGTGCACCGCCACTTTCCTGTCTGAAACTGTAGGGTTTCCTTACGTAGTCGGATC 899
Query 897 CGTAGCTCTCGGTCTTGTCACTCCTAAGACGCCTCCTCTCGGTACTGGTCTCACAGACAA 956
||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 900 CGTGGCTCTCGGTCTTGTCACTCCTAAGACGCCTCCTTTCGGTACTGGTCTCACTGACAA 959
Query 957 GATCGGTAGCTTCTGTTATGCGGTTCTTATGCCGTGTTACGTCATCGGGATTGGTAACAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATCGGTAGCTTCTGTTATGCGGTTCTTATGCCGTGTTACGTCATCGGGATTGGTAACAA 1019
Query 1017 AGTCGATTTCTTTTCATTCCATCTACGCGACGTCATAAGTTTGGAGTTGCTTTTCCTTAT 1076
||| ||||||||||||||| ||||||||||| ||||| ||||||||| ||| || |||
Sbjct 1020 AGTGGATTTCTTTTCATTCAATCTACGCGACATCATATCTTTGGAGTTCCTTATCTTTAC 1079
Query 1077 CATTAGTGCTGCAAAGTTTGCCGCCATCCTCCTTCCATCGCTTTACTTCAAAGTTCCTTT 1136
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
Sbjct 1080 CATTAGTGCTGCAAAGTTTGCCTCCATCGTCCTTCCATCGCTTTACTTCCAAGTTCCTAT 1139
Query 1137 ATCACACGCCGTGATTGTCGGGTTCATCGTCTGCATACAAGGGATCTATGATGTCCAAAT 1196
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1140 ATCACACGCAGTGATTGTCGGCTTCATCGTCTGCATACAAGGGATCTACGATGTCCAAAT 1199
Query 1197 CTTCAAACAGCTGTTGAACTACAAGAATATAAGCCAGGAAGCATTTGGGATAATGGTGAT 1256
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1200 CTTCAAACAGCTCTTGAACTACAAGAATATAAGCCACGAGGCATTTGGGATAATGGTGAT 1259
Query 1257 CTCTGCCATGGTTCACTCGACCATTTTCTCGACCATAGTCAAAAACCT-TCACGGCTGGG 1315
|||||||||||||||||||||||||||| || |||| |||||||| || | |||| ||||
Sbjct 1260 CTCTGCCATGGTTCACTCGACCATTTTCACGGCCATTGTCAAAAATCTCT-ACGGGTGGG 1318
Query 1316 TGCAGCGGAAACACATCACTTATCGGCGACAAACCGTTCAGCACTACGAACCGAACAGTC 1375
||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
Sbjct 1319 TGCAGAGGAAACACATCACTTACCGGCGACAAACCGTTCAACACTACGAACCAAACAAAC 1378
Query 1376 CTCTCAAGATCCTCACTTGTTTCTACCACCGCGAAACCGTTCCTTCCATCCTCACCGTCT 1435
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1379 CTCTCAAGATCCTCACTTGTTTCTACCACCGTGAAACCGTTCCTCCCATCCTCACCGTCT 1438
Query 1436 TGGAGCTCTCTTCTTGTATGTCAAGCGCCTCTTCGCTCTCCATCGTTTCCGTCAATCTCG 1495
||||||||||| ||||| || ||||||||||||| ||||||||||||||| |||||||
Sbjct 1439 TGGAGCTCTCTACTTGTCCCTCGAGCGCCTCTTCGCACTCCATCGTTTCCGTTAATCTCG 1498
Query 1496 AAGAGCTTGAGCGCCATAACGTCCCTCTTCTTATTCAACACCATCCCGGTCCCATCGACC 1555
|||||||||||| ||||||||||||| || |||||||||||||| | |
Sbjct 1499 AAGAGCTTGAGCAAAATAACGTCCCTCTCCTCATTCAACACCATCC-------A--G--- 1546
Query 1556 ATGCTGGCCACAACGACGAGTCCTCAATGTCCTCCAGCCGCAGAGATCAGATCTCCAAAG 1615
| | | ||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 1547 --G-T--C-ACAACGACGAGTCATCAACGTCTTCCAGCCGCAGAGATCAGATCTCCAAAG 1600
Query 1616 CCTTCGAGAAATTTCAAAGCGGACACGATTTACAAGAAAACGTTTCCGTCGAATGTTTCA 1675
||||||||||||| | |||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1601 CCTTCGAGAAATTCCGAAGCGGCCACGATTTGCAAGAAAACGTTTCCGTTGAATGTTTCA 1660
Query 1676 CAGCAGTTGCACCGAGCAAGACGATGCACGAGGACGTATGTACCTTGGCCTTTGACAAAG 1735
|||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||
Sbjct 1661 CAGCAGTTGCACCGAGCAAGACGATGCACGAGGATGTATGTGCCTTGGCCTTCGAAAAAG 1720
Query 1736 GAACCGATCTCATCATTATCGGGATTGAGGACGGGACTGCAGCAGAACGAAGGCTCTGTC 1795
|||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 1721 AAACCGATCTCATCATTTTCGGGATGGCCGACGGGACTGCAGCAGAACGAAGGCTCTGTC 1780
Query 1796 GCAACGTCCTGAATGTCTCACCTTGCTCCGTTGCGGTTCTAATGGACCAAGGACGGCTTC 1855
||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1781 GCAACGTCCGGAATGCCTCACCTAGCTCCGTTGCGGTTCTAATGGACCAAGGACGGCTTC 1840
Query 1856 CAGATTTCAAGAACATGGGAACCACGATGAAGAACGGCTCAATGAGAATCAACGTCTGTT 1915
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1841 CAGATTTCAAGAACATGGGAACGGCGATGAAGAACGGCTCAATGAGAATCAACATCTGTT 1900
Query 1916 CGATATTCCTCGGGGGAGCAGACGACCGTGAGACGCTGGCGTTTGCGGTTAGGTTGTCAA 1975
| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||
Sbjct 1901 CAATATTCCTCGGTGGAGCAGACGACCGTGAGACACTGGCCTTTGCGGTTAGAATGACAA 1960
Query 1976 ACCACCCTTGCGTAAACCTAACCGTTCTTAAACTTGTCGACGGAGAAAACGTCTCACACC 2035
|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1961 ACCAACCTTACGTAAACCTAACCGTTCTTAAACTTGTCGACGGTGAAAACGTCTCACACC 2020
Query 2036 TAAACGACGTCATAGAGAGAAGACTCGATTTCAGAACCATGGAAAAGTTCCGTCAAGACA 2095
||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2021 TAAACGACGTCGTAGAGAAAAGACTCGATTTCAGAACCATCGAAAAATTCCGTCAAGACA 2080
Query 2096 CCATGAACAAACACAATGTCACTTTACGAGAGG-A---A----G----CGAGTGATCTGG 2143
|||||||||||||||||||| |||||||||||| | | | ||||||||||||
Sbjct 2081 CCATGAACAAACACAATGTCGCTTTACGAGAGGTATGGATAAAGGAAGCGAGTGATCTGG 2140
Query 2144 TGAACCTACTGAGAGAAGAAGGTAACAATTACGATTTGATAATGGTTGGAATCAGACACG 2203
|||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 2141 TGAACCTACTGAGAGAGGAAGGTAACAATTACGATCTGATCATGGTTGGAATCAGACACG 2200
Query 2204 AAGAAAGTTTTC-AAGTGCTTCAAGGATTATCGGTATGGAGTGAGATCGAGGAGCTTGGA 2262
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2201 AAAAAAGTTT-CGAAGTGCTTCAAGGATTATCGGTATGGAGTGAGATCGAGGAGCTTGGA 2259
Query 2263 GAGATCGGAGATCTGCTCGTTTCCAGTGATCTCAAGCTCACTGCATCGGTTTTGGCTGTA 2322
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 2260 GAGATCGGAGATCTGCTCGTTTCCAGGGATCTCAAGCTTTCTGCATCGGTTTTGGCCGTA 2319
Query 2323 CAACAACAACTCTCCTCCGTCGTCGAGGAGGCTTAA 2358
||||||||||||||||| ||||||||||||| ||||
Sbjct 2320 CAACAACAACTCTCCTCTGTCGTCGAGGAGGTTTAA 2355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5