BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892041 Length=2358 Score E Sequences producing significant alignments: (Bits) Value AT5G01680.1 | Symbols: ATCHX26, CHX26 | cation/H+ exchanger 26 ... 3387 0.0 > AT5G01680.1 | Symbols: ATCHX26, CHX26 | cation/H+ exchanger 26 | chr5:253996-256640 REVERSE LENGTH=2355 Length=2355 Score = 3387 bits (1834), Expect = 0.0 Identities = 2202/2376 (93%), Gaps = 39/2376 (2%) Strand=Plus/Plus Query 1 ATGAACAATAGTGTT---AGAAATGGAACACATGAATTTGTATGTGAGGCATGGTTGGGT 57 ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| Sbjct 1 ATGAACAATAGTGTTACAAGTAATGGCACACATGAATTTGTATGCGAGGCATGGTTGGGA 60 Query 58 TCAAGCTCTGGCGGATTACTTAGAGGAGATGATCCATTGAAATATTCGActcctcttctt 117 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 TCAAGCTCTGGCGGATTACTTAGAGGAGATGATCCATTGAAATATTCAACTCCTCTTCTT 120 Query 118 cttcttctcatttctctcgtctcttctctctcttccgtcttccaagctcttctccgtcct 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 CTTCTTCTCATTTCTCTCGTCTCTTCTCTCTCTTCCGTCTTCCAAGCTCTTCTCCGCCCT 180 Query 178 ctcGCTAATGTCGACTTTGTCACTCAAATTCTGGCTGGGATATTCTTAGGCCCCTCGGCT 237 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 CTCGCAAATGTCGACTTCGTCACTCAAATTCTGGCTGGGATATTCTTAGGACCCTCGGCT 240 Query 238 TTGGGACAGAACATTGATTTAGTAACAAAATTCTTCAACACAAGAAGCT-TCTTCATAAT 296 |||||||| |||||||||||||||| |||||| |||||||||||||||| | |||||||| Sbjct 241 TTGGGACAAAACATTGATTTAGTAAAAAAATTATTCAACACAAGAAGCTAT-TTCATAAT 299 Query 297 AGAATCATTTGAGGCAATCTCCTTCATGTTCATCTCATACATAAGCACAGCTCAAGTGGA 356 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 AGAATCATTTGAGGCAATATCCTTCATGTTCATCTCATACATAAGCACGGCTCAAGTGGA 359 Query 357 CATGGGAGTTATAAAGCGAGGAGGCAAGCTCGCAATCATCAATGGTTTCTCTCTTTTTCT 416 |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct 360 CATGGGAGTTATAAAGCGAGGAGGCAAGCTAGCAATCATCAATGGATTATCTCTTTTTCT 419 Query 417 GTTTCCTTACGTGGTGGGCGCCATAGCATGTACAGTAATCACGAGCAACATCCGTGGAAC 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTTCCTTACGTGGTGGGCGCCATAGCATGTACAGTAATCACGAGCAACATCCGTGGAAC 479 Query 477 CGTGGCGAAAAATAAGCCCGAGCAGCTCCACGATTTACTGACAAACCAATCCGTAGTGTA 536 ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 480 CGTGGCGAAAAATAATCCCGAGCAGCTCCACAATTTACTAACAAACCAATCCGTAGTGTA 539 Query 537 TTTTCAAGTGGCGTATTCGGTTTTGTCAAATCTCAAGATGCTAAACTCGGAGCCCGGAAG 596 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 540 TTTTCAAGTGGCGTATTCGGTTTTGTCGAATCTCAAGATGCTGAACTCGGAGCCCGGAAG 599 Query 597 GTTAGCCCTATCCTCCATAATGGTGGCTAACTGCTTCGGCTGGGGTTTTTTCCTCCTTTT 656 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GTTAGCCCTCTCCTCCATAATGGTGGCTAACTGCTTCGGCTGGGGTTTTTTCCTCCTTTT 659 Query 657 AATTACCTTTAATAGTTTCTTGCAACACAATTACTCCAAGGCCACTTATATGCCTACCTT 716 ||||||||| | ||||||||||| || |||||||||||| |||||||| |||||||||| Sbjct 660 GATTACCTTTGACAGTTTCTTGCATCAAAATTACTCCAAGACCACTTATCTGCCTACCTT 719 Query 717 CACAAAGGTACTACTGCTTGTTGGTATAGTAGTTGTGAGCCGACCAATATTCAACTGGAT 776 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 720 CACAAAGGTACTACTGCTGGTTGGTATAGTAGTTGTGTGCCGACCAATATTCAACTGGAT 779 Query 777 AGTGAAGAGAACATCTGAAGGAAAGAAACTGAAGGCTTCCCATCTATGCACCATCTGCGT 836 |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 780 AGTGAAGAGAACCCCTGAAGGAAAGAAACTCAAGGCTTCCCATCTATGCACCATTTGCGT 839 Query 837 CATGTTGTGCACCGCTACTTTCCTGGCTGAAACCGTAGGGTTTCCTTACATAGTCGGATC 896 ||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||| Sbjct 840 CATGTTGTGCACCGCCACTTTCCTGTCTGAAACTGTAGGGTTTCCTTACGTAGTCGGATC 899 Query 897 CGTAGCTCTCGGTCTTGTCACTCCTAAGACGCCTCCTCTCGGTACTGGTCTCACAGACAA 956 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 900 CGTGGCTCTCGGTCTTGTCACTCCTAAGACGCCTCCTTTCGGTACTGGTCTCACTGACAA 959 Query 957 GATCGGTAGCTTCTGTTATGCGGTTCTTATGCCGTGTTACGTCATCGGGATTGGTAACAA 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GATCGGTAGCTTCTGTTATGCGGTTCTTATGCCGTGTTACGTCATCGGGATTGGTAACAA 1019 Query 1017 AGTCGATTTCTTTTCATTCCATCTACGCGACGTCATAAGTTTGGAGTTGCTTTTCCTTAT 1076 ||| ||||||||||||||| ||||||||||| ||||| ||||||||| ||| || ||| Sbjct 1020 AGTGGATTTCTTTTCATTCAATCTACGCGACATCATATCTTTGGAGTTCCTTATCTTTAC 1079 Query 1077 CATTAGTGCTGCAAAGTTTGCCGCCATCCTCCTTCCATCGCTTTACTTCAAAGTTCCTTT 1136 |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| | Sbjct 1080 CATTAGTGCTGCAAAGTTTGCCTCCATCGTCCTTCCATCGCTTTACTTCCAAGTTCCTAT 1139 Query 1137 ATCACACGCCGTGATTGTCGGGTTCATCGTCTGCATACAAGGGATCTATGATGTCCAAAT 1196 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1140 ATCACACGCAGTGATTGTCGGCTTCATCGTCTGCATACAAGGGATCTACGATGTCCAAAT 1199 Query 1197 CTTCAAACAGCTGTTGAACTACAAGAATATAAGCCAGGAAGCATTTGGGATAATGGTGAT 1256 |||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1200 CTTCAAACAGCTCTTGAACTACAAGAATATAAGCCACGAGGCATTTGGGATAATGGTGAT 1259 Query 1257 CTCTGCCATGGTTCACTCGACCATTTTCTCGACCATAGTCAAAAACCT-TCACGGCTGGG 1315 |||||||||||||||||||||||||||| || |||| |||||||| || | |||| |||| Sbjct 1260 CTCTGCCATGGTTCACTCGACCATTTTCACGGCCATTGTCAAAAATCTCT-ACGGGTGGG 1318 Query 1316 TGCAGCGGAAACACATCACTTATCGGCGACAAACCGTTCAGCACTACGAACCGAACAGTC 1375 ||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||| | Sbjct 1319 TGCAGAGGAAACACATCACTTACCGGCGACAAACCGTTCAACACTACGAACCAAACAAAC 1378 Query 1376 CTCTCAAGATCCTCACTTGTTTCTACCACCGCGAAACCGTTCCTTCCATCCTCACCGTCT 1435 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 1379 CTCTCAAGATCCTCACTTGTTTCTACCACCGTGAAACCGTTCCTCCCATCCTCACCGTCT 1438 Query 1436 TGGAGCTCTCTTCTTGTATGTCAAGCGCCTCTTCGCTCTCCATCGTTTCCGTCAATCTCG 1495 ||||||||||| ||||| || ||||||||||||| ||||||||||||||| ||||||| Sbjct 1439 TGGAGCTCTCTACTTGTCCCTCGAGCGCCTCTTCGCACTCCATCGTTTCCGTTAATCTCG 1498 Query 1496 AAGAGCTTGAGCGCCATAACGTCCCTCTTCTTATTCAACACCATCCCGGTCCCATCGACC 1555 |||||||||||| ||||||||||||| || |||||||||||||| | | Sbjct 1499 AAGAGCTTGAGCAAAATAACGTCCCTCTCCTCATTCAACACCATCC-------A--G--- 1546 Query 1556 ATGCTGGCCACAACGACGAGTCCTCAATGTCCTCCAGCCGCAGAGATCAGATCTCCAAAG 1615 | | | ||||||||||||| |||| ||| |||||||||||||||||||||||||||| Sbjct 1547 --G-T--C-ACAACGACGAGTCATCAACGTCTTCCAGCCGCAGAGATCAGATCTCCAAAG 1600 Query 1616 CCTTCGAGAAATTTCAAAGCGGACACGATTTACAAGAAAACGTTTCCGTCGAATGTTTCA 1675 ||||||||||||| | |||||| |||||||| ||||||||||||||||| |||||||||| Sbjct 1601 CCTTCGAGAAATTCCGAAGCGGCCACGATTTGCAAGAAAACGTTTCCGTTGAATGTTTCA 1660 Query 1676 CAGCAGTTGCACCGAGCAAGACGATGCACGAGGACGTATGTACCTTGGCCTTTGACAAAG 1735 |||||||||||||||||||||||||||||||||| |||||| |||||||||| || |||| Sbjct 1661 CAGCAGTTGCACCGAGCAAGACGATGCACGAGGATGTATGTGCCTTGGCCTTCGAAAAAG 1720 Query 1736 GAACCGATCTCATCATTATCGGGATTGAGGACGGGACTGCAGCAGAACGAAGGCTCTGTC 1795 |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| Sbjct 1721 AAACCGATCTCATCATTTTCGGGATGGCCGACGGGACTGCAGCAGAACGAAGGCTCTGTC 1780 Query 1796 GCAACGTCCTGAATGTCTCACCTTGCTCCGTTGCGGTTCTAATGGACCAAGGACGGCTTC 1855 ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1781 GCAACGTCCGGAATGCCTCACCTAGCTCCGTTGCGGTTCTAATGGACCAAGGACGGCTTC 1840 Query 1856 CAGATTTCAAGAACATGGGAACCACGATGAAGAACGGCTCAATGAGAATCAACGTCTGTT 1915 |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1841 CAGATTTCAAGAACATGGGAACGGCGATGAAGAACGGCTCAATGAGAATCAACATCTGTT 1900 Query 1916 CGATATTCCTCGGGGGAGCAGACGACCGTGAGACGCTGGCGTTTGCGGTTAGGTTGTCAA 1975 | ||||||||||| |||||||||||||||||||| ||||| ||||||||||| || ||| Sbjct 1901 CAATATTCCTCGGTGGAGCAGACGACCGTGAGACACTGGCCTTTGCGGTTAGAATGACAA 1960 Query 1976 ACCACCCTTGCGTAAACCTAACCGTTCTTAAACTTGTCGACGGAGAAAACGTCTCACACC 2035 |||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1961 ACCAACCTTACGTAAACCTAACCGTTCTTAAACTTGTCGACGGTGAAAACGTCTCACACC 2020 Query 2036 TAAACGACGTCATAGAGAGAAGACTCGATTTCAGAACCATGGAAAAGTTCCGTCAAGACA 2095 ||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 2021 TAAACGACGTCGTAGAGAAAAGACTCGATTTCAGAACCATCGAAAAATTCCGTCAAGACA 2080 Query 2096 CCATGAACAAACACAATGTCACTTTACGAGAGG-A---A----G----CGAGTGATCTGG 2143 |||||||||||||||||||| |||||||||||| | | | |||||||||||| Sbjct 2081 CCATGAACAAACACAATGTCGCTTTACGAGAGGTATGGATAAAGGAAGCGAGTGATCTGG 2140 Query 2144 TGAACCTACTGAGAGAAGAAGGTAACAATTACGATTTGATAATGGTTGGAATCAGACACG 2203 |||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| Sbjct 2141 TGAACCTACTGAGAGAGGAAGGTAACAATTACGATCTGATCATGGTTGGAATCAGACACG 2200 Query 2204 AAGAAAGTTTTC-AAGTGCTTCAAGGATTATCGGTATGGAGTGAGATCGAGGAGCTTGGA 2262 || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2201 AAAAAAGTTT-CGAAGTGCTTCAAGGATTATCGGTATGGAGTGAGATCGAGGAGCTTGGA 2259 Query 2263 GAGATCGGAGATCTGCTCGTTTCCAGTGATCTCAAGCTCACTGCATCGGTTTTGGCTGTA 2322 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| Sbjct 2260 GAGATCGGAGATCTGCTCGTTTCCAGGGATCTCAAGCTTTCTGCATCGGTTTTGGCCGTA 2319 Query 2323 CAACAACAACTCTCCTCCGTCGTCGAGGAGGCTTAA 2358 ||||||||||||||||| ||||||||||||| |||| Sbjct 2320 CAACAACAACTCTCCTCTGTCGTCGAGGAGGTTTAA 2355 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117067670940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5