BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892043
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose... 3064 0.0
> AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose
oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch
repeat type 1 (InterPro:IPR006652), Development/cell death
domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089),
Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis
thaliana protein match is: DCD (Development and Cell
Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast
hits to 7053 proteins in 482 species: Archae - 40; Bacteria
- 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses
- 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-249147
REVERSE LENGTH=2244
Length=2244
Score = 3064 bits (1659), Expect = 0.0
Identities = 1793/1858 (97%), Gaps = 8/1858 (0%)
Strand=Plus/Plus
Query 13 GGTTTACCCTATAACCACAT-TCCATACGTGCAGAAGATTGATACTGGTTTGCCATTGTT 71
|||||||||| ||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 391 GGTTTACCCTCTAACCAC-TATCCATACGTGCAGAAGATTGATATTGGTTTGCCATTGTT 449
Query 72 TCTTTTCAACTATTCTGATCGTACTCTTCATGGCATTTTTGAGGCTGCTGGTTCTGGTCA 131
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 450 TCTTTTCAACTATTCTGATCGTACACTTCATGGCATTTTTGAGGCTGCTGGTTGTGGTCA 509
Query 132 GCTGAATATTAACCCTTATGGCTGGACCTCTGATGGTTCTGATAGAACCTCATATCCTGC 191
||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 510 GCTCAATTTTGACCCTTATGGCTGGACCTCTGATGGTTCTGAGAGAACCTCATATCCTGC 569
Query 192 ACAGGTTCAAATCAGTGTGAGGTTACAGTGTGAACCACTTTCCGAGGAAAAATTCAAACC 251
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 570 ACAGGTTCCAATCAGTGTTAGGTTACAGTGTGAACCACTTTCCGAGGAAAAATTCAAACC 629
Query 252 TGCAATTGCAGATAATTACTACAGTTCTCACCATTTTTGGTTCGAGCTTGATCATTTCCA 311
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 630 TGCAATTGCAGATAATTACTACAGTTCTCACCATTTTTGGTTTGAGCTTGATCATTTCCA 689
Query 312 AACAAGTAAGTTGACATGTCTGCTAACATCTTTTGCTGTGAAACCTAAACCACCCATGAA 371
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 AACAAGGAAGTTGACATGTCTGCTAACATCTTTTGCTGTGAAACCTAAACCACCCATGAA 749
Query 372 TACACCAAACACAAGACAGATCTTTCGCTTGATTTCATCAAGTGAAAAGAAAGAGAACAG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TACACCAAACACAAGACAGATCTTTCGCTTGATTTCATCAAGTGAAAAGAAAGAGAACAG 809
Query 432 TGATGAGGTTAAGCCTTCTGAGAATGAACCAGTGGGTAGCTTGGAAGTGGCACTCAGTTC 491
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 810 TGATGAGGTTAAGCCTTCTGAGAATGAACCAGTGGGTAGCTTGGAAGTGTCACTCAGTTC 869
Query 492 TGGCAGAGAATCTGAATCCTCTGCTGCAGCTTCTTATCCTGGTTTCTCTGAGAACCATCC 551
|||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 870 TGGCGGAGAATCTGACTCCTCTGCTGCTGCTTCTCATCCTGGTTTCTCTGAGAACCATCC 929
Query 552 AGACGTACAGAACCCCAAACAAATTGAGAAGGATTATGTTCTTGAGAAACTGAAGGATCT 611
|||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 930 AGACGTACAGAACCCCAAACAAATAGATAAGGATCATGTTCTTGAGAAACTGAAGGATCT 989
Query 612 C-TCCTTTGGTCATGATGAGCATGGAGACAATAGTCTAACTGAAACTGTTGAACAAGCCA 670
| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 990 CGTC-TTTAGTCATGATGAGCATGGAGACAACAGTCTAACTGAAACTGTTGAACAAGCCA 1048
Query 671 ACATTCCTC-CCTGCAAGAACTTGGAAGACAGAGATACACTTGAAGAGGAAACATGTTCA 729
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 ACATTCC-CACCTGCAAGAACTTGGAAGACAGAGATACACTTGAAGAGGAAACATGTTCA 1107
Query 730 GAGGGaaaaaaaGATGGCAGTTCTCTTGTATCCTCTCGTCTTCCACATACAATAAGCCAG 789
||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1108 GAGGGGAAAATAGATGGCAGTTGTCTTGTATCCTCTCCTCTTCCACATACAATAAGCCAG 1167
Query 790 TTGATGCATGAGGTGAAGGAACTCAGGGCATACGGGCTGGAAAATTCAACCAAGATATGT 849
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1168 TTGATGCATGAGGTGAAGGAACTCAGGGCATGCGGGCTGGAAAATTCAACCAAGATATGT 1227
Query 850 TACTTGGAGGAGAAGCTGGACGAAGCACACAAGGAAATTTAT-AGATTGAGAGAGCGTTG 908
|||||||| |||||||||||| |||||||||||||||||||| | ||||| |||||||||
Sbjct 1228 TACTTGGAAGAGAAGCTGGACAAAGCACACAAGGAAATTTATCA-ATTGACAGAGCGTTG 1286
Query 909 CAACATGCTGGAGTCCATATCAGGTCCTTTAATCACCAAAGCTGGTGGTAGTGATATGGA 968
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1287 CAACATGCTGGAGTCCATATCAGGTCCTTTAATCACCAAAGCTGGTGGCAGTGATTTGGA 1346
Query 969 GATCCATTCACCAGATGATTCCAGCTTAGATCCAACTGAGGCAATTCTTCTTTTAGGGGG 1028
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 GATCCATTCACCAGATGATACCAGCTTAGATCCAACTGAGGCAATTCTTCTTTTAGGGGG 1406
Query 1029 ATTTGATAAAGACTCTGAAACATGGTTGTCATCAGTGCAGTCATATTTTCCATCCAGGAA 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATTTGATAAAGACTCTGAAACATGGTTGTCATCAGTGCAGTCATATTTTCCATCCAGGAA 1466
Query 1089 TGTTGTAAAGGCTCATAGTTCAATGAGCTGTATCCGTTCAAATGCATCAGTGGCAAAATT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1467 TGTTGTAAAGGCTCATAGTTCAATGAGCTGTATCCGTTCAAATGCATCAGTGGCAAAGTT 1526
Query 1149 GGATGGTAAAATTTACGCCTTTGGAGGTGATGACGGTGGCCGTGGCTGGACCAACACAGC 1208
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1527 GGATGGTAAAATTTACGTCTTTGGAGGTGATGACGGTGGCCGTGGCTGGACCAACTCAGC 1586
Query 1209 TGAATCATATAACGAGACTGATGGCCAGTGGAGCTTGTGcccccccTTAAACGAGCGTAA 1268
|||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1587 TGAATCCTTTAACCAGACTGATGGCCAGTGGAGCTTGTGCCCCCCCTTAAACGAGCGAAA 1646
Query 1269 AGGAAGTTTAGGTGGAGCCACTTTGGATGGAAAAATATTTGCAATCGGAGGTGGGAATGG 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 AGGAAGTTTAGGTGGAGCCACTTTGGATGGAAAAATATTTGCAATCGGAGGTGGGAATGG 1706
Query 1329 AATGGTATCTTTTTCAGATGTTGAGATGCTTGATCCAGATATAGGTAGATGGATCAGAAC 1388
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1707 GATGGTATCTTTTTCAGATGTTGAGATGCTTGATCCAGATATAGGGAGATGGATCAGAAC 1766
Query 1389 AAGGTCAATGGGGCAGGAGAGATTTGCAGTTGCGTCCGTGGAGCATAAAGGTTCGATTTA 1448
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1767 AAGGTCAATGGGGCAGGAGAGATTTGCAGTTGCGTCCGTGGAGCATAAAAGTTCAATTTA 1826
Query 1449 TGCTGTCGGTGGTTTTGATGGTAAAGCGTACCTGAACACAGCTGAAAGGTTTGATCCTAG 1508
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1827 TGCTGTCGGTGGTTATGATGGTAAAGAGTACCTGAACACAGCTGAAAGGTTTGATCCTAG 1886
Query 1509 AGAGCACTCCTGGATGAATATTACATCGATGAAGTCAAGAAGAGGCTGCCATTCTCTTGT 1568
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1887 AGAGCACTCCTGGATGAATATTGCATCGATGAAGTCGAGAAGAGGCTGCCATTCTCTTGT 1946
Query 1569 TGTTCTGAACGAAAAACTATATGCGATTGGTGGGTTTGATGGTGAGACAATGGTATCGAG 1628
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 TGTTCTGAATGAAAAACTATATGCGATTGGTGGGTTTGATGGTGAGACAATGGTATCGAG 2006
Query 1629 TGTTGAGATATATGAGCCAAGGACAGGGACATGGATGACAGGAGAACCAATGAAGGATTT 1688
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2007 TGTTGAGATATATGAGCCAAGGACAGGGACATGGATGACGGGAGAACCAATGAAGGATTT 2066
Query 1689 AAGAGGATATTCAGCAGTGGCAGTGGTTAAAGACACGATATATGTCATCGGAGGATACAA 1748
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 2067 AAGAGGATATTCAGCAGTGGCAGTGGTTAAAGACTCAATATATGTGATCGGAGGATACAA 2126
Query 1749 AGGGGAAGAGGATGACATATTAGACACTGTAGAGTGTTTCAAGGAAGGTGAAGGGTGGAA 1808
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2127 AGGGGAAGAGGATGACATATTAGACACTGTTGAGTGTTTTAAGGAAGGTGAAGGGTGGAA 2186
Query 1809 AAATGTGCCTTCTTCCTCGATCGGTAGGCGTTGCTTTCTATCTGCAGTGGCTTTGTAA 1866
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2187 AAACGTGCCTTCTTCCTCGATCGGTAGGCGTTGCTTTCTATCTGCGGTGGCTTTGTAA 2244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92369002800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5