BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892051

Length=711
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01580.1 | Symbols: OSH1 | gamma interferon responsive lysos...  1144    0.0  
  AT5G01570.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   115    5e-25


> AT5G01580.1 | Symbols: OSH1 | gamma interferon responsive lysosomal 
thiol (GILT) reductase family protein | chr5:222760-223852 
REVERSE LENGTH=702
Length=702

 Score = 1144 bits (619),  Expect = 0.0
 Identities = 682/711 (96%), Gaps = 9/711 (1%)
 Strand=Plus/Plus

Query  1    ATGGCATCATATCAGAGGCTTCTCAGGTTGGCCATCACAAGTTTCACAATCTTCTTCTGC  60
            ||||||||||||||||||   ||    || | ||||||||||| ||||||||||||||||
Sbjct  1    ATGGCATCATATCAGAGG---CT----TT-G-CATCACAAGTTGCACAATCTTCTTCTGC  51

Query  61   CTCTTATCTCTGTCTTCAAGCCAGAAAGTCACACTAAGTCTATACTACGAAGCTCTATGC  120
            ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct  52   CTCTTATCTCTGTCTTCAAGCCAGAAAGTTACACTAAGTTTATACTACGAAGCTCTATGC  111

Query  121  CCCTACTGTGCAGAATTCATCGTCAATCACTTGCCTAAGATCTTCGAAACCGGCTTAATC  180
            |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct  112  CCCTTCTGTGCAGAATTCATCGTCAACCGCTTGCCTAAGATCTTCGAAACCGGCTTAATC  171

Query  181  TCATCCATTGATCTCCAGCTCGTTCCATGGGGCAATGCCGTTATCAGACCAGATGGCACC  240
            ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct  172  TCATCCATTGATCTCCAGCTCGTTCCATGGGGCAACGCCGCTATCAGACCAGATGGAACC  231

Query  241  ATTCTCTGCCAGCACGGAGAAGCTGAGTGTGCGCTCAACTCAATTCACGCCTGTGCAATA  300
            ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct  232  ATTCTCTGCCAGCACGGAGAAGCTGAGTGTGCGCTCAACGCAATTCATGCCTGTGCAATA  291

Query  301  AACGCATACCCTGATGTGATGAAGCATTTTGGATACATCTACTGTACGGAACGGCTAGTC  360
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  292  AACGCATACCCTGATGTGATGAAGCATTTTGGATACATCTACTGTACGGAACAGCTAGTC  351

Query  361  TTGGAGAACAAACTTGAAAAATGGGCTGATTGTTTAGAAATGGTTGGATTGAGCAGAGCA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  TTGGAGAACAAACTTGAAAAATGGGCTGATTGTTTAGAAATGGTTGGATTGAGCAGAGCA  411

Query  421  GCAGTTGATTGTTACATTAACGGATACGGAAACCAGCTTGAACAGAGGTATGCTGAAGAA  480
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  GCGGTTGATTGTTACATTAACGGATACGGAAACCAGCTTGAACAGAGGTATGCTGAAGAA  471

Query  481  ACTTCTGAACTTTATCCAGCACACAGATTTGTACCATGGGTGGTTGTGAATAACCAACCA  540
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  472  ACTTCTGAACTTTATCCAGCACATAGATTTGTACCATGGGTGGTTGTGAATAACCTACCA  531

Query  541  CTTCAAGAGAACTACCAGAACTTTGTCATGTATGTATGCAATGCTTATGGAAGTAACCAA  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  532  CTTCAAGAGAACTACCAGAACTTTGTCATGTATGTATGCAATGCTTATGGAAGTAACCAA  591

Query  601  GTACCAGAAGGGTGCAGGATCCTCAACAGTTCGGTGGAGACACTAAGCAGGTTCAATAGT  660
            |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  592  GTACCAGAAGCGTGCAGGATCCTCAACAGTTCGGTGGAGACACTAAGCAGGTCCAATAGT  651

Query  661  TCAGTGGAGAAGCTAAGTAACATTCACCAAGTTTGCTATACCAATCACTAA  711
            |||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct  652  TCAGTGGAGAAGCTAAGTAACAGTCCCCAAGTTTGCTATTCCAATCACTAA  702


> AT5G01570.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G08880.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:221367-222836 FORWARD LENGTH=644
Length=644

 Score =  115 bits (62),  Expect = 5e-25
 Identities = 70/74 (95%), Gaps = 0/74 (0%)
 Strand=Plus/Minus

Query  635  TGGAGACACTAAGCAGGTTCAATAGTTCAGTGGAGAAGCTAAGTAACATTCACCAAGTTT  694
            |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct  644  TGGAGACACTAAGCAGGTCCAATAGTTCAGTGGAGAAGCTAAGTAACAGTCCCCAAGTTT  585

Query  695  GCTATACCAATCAC  708
            ||||| ||||||||
Sbjct  584  GCTATTCCAATCAC  571



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34460624842


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5