BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892054
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01550.1 | Symbols: LECRKA4.2 | lectin receptor kinase a4.1 ... 3064 0.0
> AT5G01550.1 | Symbols: LECRKA4.2 | lectin receptor kinase a4.1
| chr5:214517-216583 REVERSE LENGTH=2067
Length=2067
Score = 3064 bits (1659), Expect = 0.0
Identities = 1932/2067 (93%), Gaps = 6/2067 (0%)
Strand=Plus/Plus
Query 7 CTCGTGCTCTTCTTGCTTTTGACCATCCCTACTCGAGCTCAAGGAACAACAACGGAGACT 66
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 4 CTCGTGCTCTTCTTGCTTTTGACCATCCCTACTCGAGCTCAAAGAACAACAACGGAGACT 63
Query 67 CCAATAACAGAGTTTATTTTCCGAGGTTTTAGTGGAAACCAATCGAATATTGTGACTACG 126
|||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 64 CCAAAAACAGAGTTTATTTTCCGAGGTTTTAGCGGAAACCAATCAAATATTGTGACAACG 123
Query 127 GGAACTGCGACGATCAAACCCGACGGCCTATTGAGGCTCACTGACCGAAACCCAAACGTT 186
||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct 124 GGAGCTGCGACGATCAAACTCGACGGACTATTGAGGCTCACTGACCGAAACTCAAACGTT 183
Query 187 ACCGGTACATCTTTCTACCACAAAGCGGTGAGATTGCTGGAGACCAATACAAGTTCCACA 246
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 184 ACCGGTACATCTTTCTACCACAAACCTGTGAGATTGCTGGAGACTAATACAAGTTCCACA 243
Query 247 AACGCTACGGTTCGTTCTTTTAGCACTTCTTTTGTATTTGTCATAATCCCTGCAAGCTCC 306
||| | || | ||||||||||||||||| || ||||||||||| |||||| |||||||
Sbjct 244 AACTCCACAATCCGTTCTTTTAGCACTTCCTTCGTATTTGTCATCATCCCTACAAGCTCT 303
Query 307 AGCAACGGAGGTTTTGGCTTCACCTTCACACTCTCTCCAACCCCTGATCGTACCGGAGCC 366
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 304 AGCAACGGAGGTTTTGGCTTCACCTTCACGCTATCTCCAACCCCTGATCGTACCGGAGCC 363
Query 367 GAATCTGCACAGTATTTAGGACTTCTCAACAAAGGGAACGACGGGAATTTGACGAATCAT 426
||||| |||||||| || |||||||||||||||| ||||||||||||| |||||||||
Sbjct 364 GAATCCGCACAGTACTTGGGACTTCTCAACAAAGCAAACGACGGGAATTCGACGAATCAC 423
Query 427 GTTTTCGCGGTGGAATTCGACACGGTGCAAGGTTTCAAAGACGGTGCCGATAGAACAGGC 486
||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 424 GTTTTTGCTGTGGAATTCGACACAGTGCAAGGTTTTAAAGACGGTGCCGATAGAACAGGC 483
Query 487 AATCACATCGGTCTAAATTTCAACAGTTTAACATCTGATGTTCAAGAACCGGTCGTGTAT 546
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 484 AATCACATCGGTCTGAATTTCAACAGTTTAACATCTGATGTCCAAGAACCGGTCGTGTAT 543
Query 547 TACGACAACGAAGATCCTGACCGGAAAGAGGATTTCCCACTACAGAGCGGCGATCCGATC 606
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 544 TACGACAACGAAGATCCTAACCGGAAAGAGGATTTCCCACTACAGAGTGGCGATCCAATC 603
Query 607 CGAGCAATTTTAGATTACGATGGGCCAACTAAAACGCTAAACTTAACTGTCTACCCGGCT 666
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 604 CGAGCAATTTTGGATTACGATGGGCCAACTCAAACGCTAAACTTAACTGTCTACCCGGCT 663
Query 667 AACTTGAAGTCTAGACCCGTAAGGCCTTTGATCTCCCGACCGGTTCCGAAA-TTATCGCA 725
||||||||||||||||||||||||||||||||||| ||||| ||||| ||| || |||||
Sbjct 664 AACTTGAAGTCTAGACCCGTAAGGCCTTTGATCTCGCGACCTGTTCC-AAAGTTGTCGCA 722
Query 726 GATCGTGCAAGAAGAAATGTATGTCGGATTCACAGCAGCTACAGGGAGAGATCAGTCGAG 785
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 723 AATCGTGCAAGAAGAAATGTATGTTGGATTCACAGCAGCTACAGGGAGAGATCAGTCGAG 782
Query 786 CGCTCATTACATCATGGGCTGGAGTTTTTCTAGCGGCGGCGATCTTCTGACTGCAGACAC 845
||||| ||| |||||||||||||||||||||||||||| |||||||| |||| ||| ||
Sbjct 783 TGCTCACTACGTCATGGGCTGGAGTTTTTCTAGCGGCGGTGATCTTCTAACTGAAGATAC 842
Query 846 TCTTGACCTGTTGGAACTTCCTCGTCCCCCTCCGAATACGGCGAAGAAGAGAGGTTACAA 905
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 843 GCTTGACCTCTTGGAACTTCCTCGTCCGCCTCCGAACACGGCGAAGAAGAGAGGTTACAA 902
Query 906 TTCTCAAGTACTCGCTCTGATCGTAGCTCTATCGGGCGTAACCTTGGTCTTGCTTGCGTT 965
|||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 903 TTCTCAAGTACTCGCTCTGATCGTAGCTCTATCGGGAGTAACAGTGATCTTGCTTGCGTT 962
Query 966 ACTCTTCTTCTTCGTGATGTATAAGAAACGATTGCAACAAGGAGAGATTCTTGAAGACTG 1025
||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 963 ACTCTTCTTTTTCGTGATGTACAAGAAACGATTGCAACAAGGAGAGGTTCTTGAAGACTG 1022
Query 1026 GGAAATCAATCATCCTCACAGACTCAGATATAAAGATCTCTACGCTGCTACTGATGGATT 1085
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1023 GGAAATCAATCATCCTCATAGACTTAGATATAAAGATCTCTACGCTGCTACGGATGGATT 1082
Query 1086 TCA-GGAGAATAGGATTATCGGTACTGGAGGATTCGGAACCGTTTTCCGAGGAAACATCT 1144
|| ||||||||||||| |||| ||||||||||| ||||||||||||||||||||| | |
Sbjct 1083 -CAAGGAGAATAGGATTGTCGGAACTGGAGGATTTGGAACCGTTTTCCGAGGAAACTTAT 1141
Query 1145 CGTCTCCTTTGTCTGATCAAATCGCCGTGAAGAAGATAACTCCCAATAGTATGCAAGGTG 1204
|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1142 CGTCACCTTCGTCTGATCAAATCGCCGTGAAGAAGATAACTCCGAATAGTATGCAAGGTG 1201
Query 1205 TTCGAGAATTTATAGCAGAGATTGAGAGTTTGGG-ACGATTAAGGCATAAGAATCTGGTC 1263
|||||||||| || |||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 1202 TTCGAGAATTCATCGCAGAGATCGAGAGTTTGGGGA-GATTAAGGCATAAGAATCTGGTC 1260
Query 1264 AACCTTCAAGGATGGTGCAAGCaaaaaaaCGACCTCTTGTTAATTTATGACTATATCCCT 1323
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1261 AACCTTCAAGGATGGTGCAAGCAAAAAAACGATCTCTTGTTAATTTATGATTATATCCCT 1320
Query 1324 AATGGAAGCTTAGACTCGCTGCTTTACAGTAGACCAAGACAGAGCGGCGCCGTTTTGTCG 1383
|| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 1321 AACGGAAGCTTAGACTCGCTGCTCTACAGTAGACCAAGACAGAGCGGTGTTGTTTTGTCG 1380
Query 1384 TGGAACGCACGTTTTCAGATCGCTAAAGGAATCGTGTCTGGTTTGTTGTATCTCCATGAA 1443
||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1381 TGGAACGCACGTTTTAAGATTGCTAAAGGAATCGCGTCTGGTTTGTTGTATCTCCATGAA 1440
Query 1444 GAATGGGAAAAGATTGTGATTCACAGAGACATAAAACCTAGCAACGTTTTGATTGAGGAA 1503
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GAATGGGAAAAGGTTGTGATTCACAGAGACATAAAACCTAGCAACGTTTTGATTGAGGAC 1500
Query 1504 GATATGAATCCTAGGTTGGGAGATTTTGGACTCGCAAGGCTTTACGAACGCGGATCGCAA 1563
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1501 GATATGAATCCTAGGTTGGGAGATTTTGGACTCGCGAGGCTTTACGAACGCGGATCGCAA 1560
Query 1564 TCAAAAACGACCGTAGTCGTGGGCACGATTGGCTATATGGCGCCAGAGCTGGCCCGCAAC 1623
|| || |||||||||||||||||||| ||||| || ||||| |||||||| || ||||||
Sbjct 1561 TCGAACACGACCGTAGTCGTGGGCACAATTGGGTACATGGCACCAGAGCTAGCACGCAAC 1620
Query 1624 GGCAGATCTTCGTCTGCGTCTGATGTTTTTGCGTTTGGCGTTTTGCTATTAGAGATAGTC 1683
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1621 GGCAAATCTTCGTCTGCGTCTGATGTTTTTGCGTTTGGCGTTTTGTTATTAGAGATAGTC 1680
Query 1684 TCCGGGAGAAGACCGACGGACTCAGGGACCTTCTTCTTGGCAGACTGGGTTATGGAATTG 1743
||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1681 TCCGGGAGAAGACCGACTGACTCAGGGACATTCTTCTTGGCCGATTGGGTTATGGAATTG 1740
Query 1744 CACGCGAGAGGAGAGATTCTTCACGCGGTGGATCCGAGACTTGGATTTGGTTACGACAGC 1803
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 1741 CACGCGAGAGGAGAGATTCTCCATGCGGTGGATCCGAGACTTGGATTTGGTTACGACGGC 1800
Query 1804 GTAGAGGCAAGGCTTGCTCTTGTTGTGGGATTGCTCTGTTGCCATCAAAGACCGACGTCA 1863
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GTTGAGGCACGGCTTGCTCTTGTTGTGGGATTGCTCTGTTGCCATCAAAGACCGACGTCT 1860
Query 1864 AGGCCGTCGATGAGAATGGTGCTTAGGTATTTGAACGGGGACGAAGATGTTCCTGAAATT 1923
||||||| ||||||| ||||||||||||||||||||| || || ||||| |||||||||
Sbjct 1861 CGGCCGTCCATGAGAACGGTGCTTAGGTATTTGAACGGAGATGATGATGTACCTGAAATT 1920
Query 1924 GATAACGATTGGGGATACTCAGATTCTTCAAGAAGGGATTTAGGATCCAACTTTGAAGGA 1983
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1921 GATAACGATTGGGGATACTCGGATTCTTCAAGAAGCGATTTAGGATCCAACTTTGAAGGA 1980
Query 1984 TATGTTTCATCGGATAGGGTTTCGAGCTCAGTCGCATCGTTCTCCGTTACAAGGATGTCT 2043
||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| | |||
Sbjct 1981 TATGTTTCATCGGATAGGGCTTCGAGCTCAGTCCCATCTTTCTCCGTTACAAGGGTTTCT 2040
Query 2044 TCAAGCTCTGTTGTCAGTGGTAGATAG 2070
|| || |||||| ||||||||||||||
Sbjct 2041 TCTAGTTCTGTTATCAGTGGTAGATAG 2067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102609913980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5