BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892083

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01300.1 | Symbols:  | PEBP (phosphatidylethanolamine-bindin...   765    0.0  


> AT5G01300.1 | Symbols:  | PEBP (phosphatidylethanolamine-binding 
protein) family protein | chr5:121483-122525 REVERSE LENGTH=726
Length=726

 Score =  765 bits (414),  Expect = 0.0
 Identities = 466/491 (95%), Gaps = 4/491 (1%)
 Strand=Plus/Plus

Query  1    ATGTCAAGTGAGGAGTTCAGGCTGGTTTCGCCGACGATAGACAACGACGGTAATTTGCCG  60
            ||||| ||||||||||| ||||||||||||||||||||||||||||| || || ||||||
Sbjct  78   ATGTCGAGTGAGGAGTTGAGGCTGGTTTCGCCGACGATAGACAACGATGGGAAGTTGCCG  137

Query  61   AGAAAGTATACCCA-GGGAGGTCAAGGTGCTAAGAAAGATC-TCTCTCCTCCTCTTGAAT  118
            |||||||||| | | || ||||||||||| ||||||||| | ||||||||||||||||||
Sbjct  138  AGAAAGTATA-CGATGGCAGGTCAAGGTGTTAAGAAAGA-CATCTCTCCTCCTCTTGAAT  195

Query  119  GGTACAACGTTCCAGAAGGTACAAAATCGCTAGCATTGGTGGTGGAAGACATCGATGCGC  178
            |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct  196  GGTACAACGTTCCAGAAGGTACAAAAACGCTAGCTTTGGTGGTGGAAGACATCGATGCGC  255

Query  179  CAGATCCTAGTGGACCGCTCGTGCCATGGACGGTGTGGGTTGTCGTCGACATACCACCAG  238
            | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  256  CTGATCCTAGTGGCCCGCTGGTGCCATGGACGGTGTGGGTTGTCGTCGACATACCACCAG  315

Query  239  AGATGAAAGGCCTACCGGAAGGATATTCCGGCACTGAGGAGCAGACTACCGGTATTCGGG  298
            ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct  316  AGATGAAAGGCCTACCGGAAGGATATTCCGGCAATGAGGATCAGACTACCGGTATTCGGG  375

Query  299  AAGGGAACAACGATCACAAGATTCCGGGATGGCGTGGGCCTCTCTTGCCTAGTCACGGTC  358
            ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  376  AAGGGAACAACGATCACAAGATTCCGGGATGGCGTGGACCTCTCTTACCTAGTCACGGTC  435

Query  359  ACCGTTTTCAGTTCAAGCTTTTCGCTCTCGATGATACACCCAAGATTGGTCACACGGTGA  418
            |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct  436  ACCGTTTTCAGTTCAAGCTTTTTGCTCTCGATGATAAACCCAAGATTGGTCACACGGTGA  495

Query  419  CAAAAGAGAGATTGCTGATCGCAATTGAAGGGCACGTGCTAGGAGAAGCCATCTTGACGT  478
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  496  CGAAAGAGAGATTGCTGATCGCAATTGAAGGGCACGTGCTAGGAGAAGCCATCTTGACGT  555

Query  479  GTGTGGCCTAA  489
            || ||||||||
Sbjct  556  GTTTGGCCTAA  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5