BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892092
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01220.1 | Symbols: SQD2 | sulfoquinovosyldiacylglycerol 2 |... 2254 0.0
> AT5G01220.1 | Symbols: SQD2 | sulfoquinovosyldiacylglycerol 2
| chr5:86585-89986 REVERSE LENGTH=1956
Length=1956
Score = 2254 bits (1220), Expect = 0.0
Identities = 1458/1565 (93%), Gaps = 47/1565 (3%)
Strand=Plus/Plus
Query 3 GACCCTTTCTTCTATAAATCTCTCTGTATCTCCTCGTTTGCTTCCTAGCACGACCATCAT 62
||| ||||||||||||||||||||| || |||||| |||||||||||||||| |
Sbjct 107 GACTCTTTCTTCTATAAATCTCTCTATACCTCCTCATTTGCTTCCTAGCACG------A- 159
Query 63 CATCAACACTTGTTCTTCTTCCTCTGCTGCAGCCACTTG-T-T-CTCCCAGG---TGTTC 116
| | |||||||||||||||| | || ||||| || |||| | | |||||||| | |||
Sbjct 160 C-T-AACACTTGTTCTTCTT-C-CT-CTGCAACCTCTTGTTCTCCTCCCAGGTCTTCTTC 214
Query 117 TTTTG---TTCATTCCCCTGTTTCATTCGGTCTTTCGTGTCAACGGAGATTACCCATTAG 173
||||| |||||||||| || ||| | ||| | |||| |||||||||||| |
Sbjct 215 TTTTGTTCTTCATTCCCC----TCTTTC-G--TTT-G-GTCACCGGAGATTACCC---A- 261
Query 174 CTTGATTCGCAAGAAAAGCAAGCTCCGCTTCTGTGGAGAGATTACAAGGGAGGCTGTTTC 233
|| | |||||||||||||||||||||||||||||| |||||||| ||| | |
Sbjct 262 -TT-A---GCAAGAAAAGCAAGCTCCGCTTCTGTGGAGTGATTACAA---AGGAAG---C 310
Query 234 TGTTTCTGGGTCCAACGATATGACTATTACTGAAGTTAGGGAAGATGACGAATCGGAGAT 293
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 311 TGTTTCTGGGTCCAACGATATGACTATTACTCAAGTCAGAGAAGATGACGAATCGGAGAT 370
Query 294 TGAAGCTCCGCTTCTCGATCCTGAGTCGCTCTCAAAGCCTAGGAGAATCGCTCTCTTTGT 353
||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 371 TGATGCGCCGCTTCTCGATCCTGAGTCGCTCTCTAAGCCTAGGAGAATTGCTCTCTTTGT 430
Query 354 TGAGCCTTCACCGTTTGCCTATGTCTCCGGATACAAAAACAGATTCCAGAATTTCATTAG 413
||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 431 TGAGCCTTCTCCCTTTGCCTATGTATCCGGCTACAAAAACAGATTCCAGAATTTCATTAG 490
Query 414 GTATCTGCGTGAAATGGGAGACGAGGTTATAGTTGTGACGACACATGAAGGTGTTCCTGA 473
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 491 ATACCTCCGTGAAATGGGAGACGAGGTTATAGTCGTGACGACACATGAAGGTGTTCCTGA 550
Query 474 AGAGTTTTATGGAGCCAAAGTCATTGGATCAAGAAGCTTCCCTTGCCCTTATTACCAAAA 533
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 551 AGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAGCTTCCCTTGTCCTTATTACCAAAA 610
Query 534 GGTTCCACTCTCGCTTGCGCTTAGTCCAAGAATCATCTCTGAAATTGCACGGTTTAAGCC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GGTTCCACTCTCGCTTGCGCTTAGTCCAAGAATCATCTCTGAAATTGCACGGTTTAAGCC 670
Query 594 TGACATAATACACGCTTCGTCTCCCGGGA-TAATGGTCTTTGGTGCTCTGGCAATAGCAA 652
|||||| ||||||||||| |||||| ||| | ||||||||||||||||||||||||||||
Sbjct 671 TGACATTATACACGCTTCATCTCCC-GGAGTTATGGTCTTTGGTGCTCTGGCAATAGCAA 729
Query 653 AAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTATACATCCCAA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTATACATCCCAA 789
Query 713 GATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTATAATAAGATTCCTTCACAGAG 772
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 790 GATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTATAATAAGGTTCCTTCACAGAG 849
Query 773 CGGCTGATCTTACATTAGTTCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CGGCTGATCTTACATTAGTTCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTG 909
Query 833 CAACTGCAGCTAATCAACTTCGACTTTGGAATAAGGGTGTCGATTCAGAAAGCTTCAATC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CAACTGCAGCTAATCAACTTCGACTTTGGAATAAGGGTGTCGATTCAGAAAGCTTCAATC 969
Query 893 CCCGTTTCCGTTCTCAAGAAATGCGTATAAGACTAAGTAATGGTGAACCAGAAAAGCCAC 952
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 970 CCCGTTTCCGTTCTCAAGAAATGCGTATAAGACTGAGTAATGGCGAACCAGAAAAGCCAC 1029
Query 953 TAGTGATCCATGTAGGTCGTATCGGCGTAGAGAAGAGTTTGGAGCTTCTAAAGAGTGTAA 1012
||||||| ||||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct 1030 TAGTGATTCATGTAGGTCGCATTGGCGTAGAAAAGAGTTTGGAGCTTTTAAAGAGTGTAA 1089
Query 1013 TGGACAAATTACCTGAAGCTCGGATTGCTTTCATTGGAGATGGACCATACAAAGAGGATC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TGGACAAATTACCTGAAGCTCGGATTGCTTTCATTGGAGATGGACCATACAAAGAGGATC 1149
Query 1073 TTGAGAAGTTGTTTACCGGAATGCCAGCGGTTTTCACGGGAATGTTGCAAGGCGATGAAC 1132
||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 1150 TTGAGAAGTTGTTTACCGGAATGCCAGCGGTTTTCACTGGAACGTTACAAGGCGATGAAC 1209
Query 1133 TCTCACAAGCTTACGCAAGTGGAGATGTGTTTGTGATGCCATCAGAGTCAGAGACACTTG 1192
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1210 TCTCACAAGCTTACGCAAGTGGAGATGTGTTTGTGATGCCATCAGAGTCGGAGACACTTG 1269
Query 1193 GCCTTGTGGTTCTTGAAGCAATGGCTTCAGGACTTCCTGTAGTTGCGGCCCGTGCCGGTG 1252
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 1270 GCCTTGTGGTTCTTGAAGCAATGTCTTCAGGACTTCCTGTCGTCGCGGCCCGTGCCGGTG 1329
Query 1253 GAATCCCTGATATAATCCCTGAAGACCAGGAGGGAAAAACTGGATTTTTGTTCAACCCTG 1312
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1330 GAATCCCTGATATAATCCCTGAAGATCAGGAGGGAAAAACCGGATTTTTGTTCAACCCTG 1389
Query 1313 GAGATGTCGAAGACTGCGTGACGAAGCTGAGAGCTTTACTGCACGACCGTGAAAAAAGAG 1372
||||||| ||||| |||||||| || |||||| ||||||||||||||||||||| |||||
Sbjct 1390 GAGATGTTGAAGATTGCGTGACAAAACTGAGAACTTTACTGCACGACCGTGAAACAAGAG 1449
Query 1373 AGATCATTGGAAAAGCGGCAAGAGAAGAAACCGAGAAGTATGATTGGAGAGCAGCAACGA 1432
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1450 AGATCATTGGAAAAGCGGCAAGAGAAGAGACCGAGAAATATGATTGGAGAGCAGCAACGA 1509
Query 1433 CAAAGATACGCAATGAACAATACAGTGCAGCGATTTGGTTCTGGAGGAAAAAGAAAGTTC 1492
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 CAAAGATACGCAATGAACAGTACAGTGCAGCGATTTGGTTCTGGAGGAAAAAGAAAGTTC 1569
Query 1493 ATGTTTTGGGACCAATCAATTGGTTGATTAAACGACTGTTTCCAGTGCCGGAAGTTAACG 1552
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1570 ATGTTTTGGGACCAATCAATTGGTTGATTAAACGACTGTTTCCAGTACCGGAAGGTAACG 1629
Query 1553 TGTAG 1557
|||||
Sbjct 1630 TGTAG 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5