BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892095
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01190.1 | Symbols: LAC10 | laccase 10 | chr5:72392-74756 FO... 2667 0.0
> AT5G01190.1 | Symbols: LAC10 | laccase 10 | chr5:72392-74756
FORWARD LENGTH=1821
Length=1821
Score = 2667 bits (1444), Expect = 0.0
Identities = 1604/1682 (95%), Gaps = 7/1682 (0%)
Strand=Plus/Plus
Query 1 ATGGAATTTCCAATAATCCGGATTTTGGTTCTTTTCGCATTACTCGCCTTCCCGGCATGC 60
|||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGTATTTCCAAT--T-CGGATTTTGGTTCTTTTCGCATTGCTCGCCTTCCCGGCATGC 57
Query 61 GTCCACGGTGCAATTCGCAAGTACACATTCAACGTGGTAACGAAACAAGTAACAAGGCTT 120
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 58 GTCCACGGTGCAATCCGCAAGTACACCTTCAACGTGGTAACGAAACAAGTGACGCGGATT 117
Query 121 TGTTCAACGAAACAGATCGTTACCGTTAACGGTAAATTTCCAGGACCCACAATCTACGCT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 TGTTCAACGAAACAGATCGTTACCGTTAACGGTAAATTCCCAGGACCCACAATCTACGCT 177
Query 181 AATGAAGACGACACAATTCTCGTTAACGTCGTTAACAACGTCAAGTATAACGTCTCTATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AATGAAGACGACACAATTCTCGTTAACGTCGTTAACAACGTCAAGTATAACGTCTCTATC 237
Query 241 CATTGGCATGGGATAAGACAATTAAGAACCGGTTGGGCTGACGGACCGGCCTATATAACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 CATTGGCATGGGATAAGACAATTAAGAACCGGTTGGGCTGACGGACCGGCCTACATAACT 297
Query 301 CAATGTCCAATTAAACCGGGTCACAGCTACGTGTATAATTTCACGGTCACGGGGCAACGT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 CAATGTCCAATTAAGCCGGGTCACAGCTACGTGTATAATTTCACGGTCACGGGTCAACGT 357
Query 361 GGTACGCTCTGGTGGCATGCGCATGTTCTCTGGCTCCGAGCTACAGTTCATGGTGCCATC 420
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 358 GGTACGCTCTGGTGGCACGCACATGTTCTCTGGCTCCGAGCTACGGTTCATGGTGCCATC 417
Query 421 GTGATTCTGCCTAAACCGGGTCTACCTTACCCGTTCCCTAAACCACACAGAGAAGAAGTC 480
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 GTGATTCTGCCTAAACTGGGTCTACCTTACCCGTTCCCTAAACCACATAGAGAAGAAGTC 477
Query 481 ATCATACTAGGTGAGTGGTGGAAATCAGATACCGAAACGGTTGTTAATGAAGCATTAAAA 540
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 478 ATCATACTCGGTGAGTGGTGGAAATCAGATACCGAAACGGTAGTAAATGAAGCATTAAAA 537
Query 541 TCCGGTTTAGCACCCAATGTCTCAGATGCTCACGTCATTAACGGTCATCCCGGTCTCGTT 600
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 TCCGGTTTAGCACCAAATGTCTCAGATGCTCACGTCATTAACGGTCATCCCGGTTTCGTT 597
Query 601 CCAAACTGTCCGTCGGAAGGTAATTTTAAATTAGCAGTGGAAAGCGGGAAAACATACATG 660
||||| ||||||||| ||||||||||||||||||| || || ||||||||||||||||||
Sbjct 598 CCAAATTGTCCGTCGCAAGGTAATTTTAAATTAGCGGTAGAGAGCGGGAAAACATACATG 657
Query 661 CTACGATTAATAAACGCAGCTAT-GAACGAAGAACTCTTCTTCAAAATCGCCGGCCACCG 719
|||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 658 CTACGACTAATAAACGCAGC-ATTGAACGAAGAACTCTTCTTCAAGATCGCCGGCCACCG 716
Query 720 TTTCACCGTTGTGGAAGTCGACGCCGTCTACGTCAAACCCTTCAACACCGACACAATCCT 779
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 717 TTTCACCGTTGTGGAAGTCGACGCCGTATATGTCAAACCCTTCAACACCGACACAATCCT 776
Query 780 AATCGCCCCCGGTCAAACCACCACCGCCTTAGTCTCCGCCGCACGTCCCTCCGGTCAATA 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 AATCGCCCCCGGTCAAACCACCACCGCCTTAGTCTCCGCCGCACGTCCTTCCGGTCAATA 836
Query 840 CCTAATTGCCGCCGCTCCTTTTCAAGACTCGGCCGTCGTTGCCGTCGATAATCGCACCGC 899
||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 837 TCTAATCGCCGCTGCTCCTTTCCAAGACTCCGCCGTCGTCGCCGTCGATAATCGCACCGC 896
Query 900 CACCGCTACCGTTCATTACTCCGGAACGCTCTCCGCCACACCCACCAAAACCACTTCACC 959
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 897 CACCGCTACCGTTCATTACTCCGGCACGCTCTCCGCCACACCCACCAAAACCACTTCACC 956
Query 960 ACCGCCTCAAAACGCCACCTCTGTAGCAAATACATTCATTAATTCCCTCCGGAGTCTCAA 1019
|||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||
Sbjct 957 ACCGCCTCAAAACGCCACCTCTGTCGCAAATACATTCGTTAATTCCCTCAGAAGTCTCAA 1016
Query 1020 TTCAAAGACATATCCGGCTAAAGTTCCGATCACCGTTGATCACGATCTAT-TATTCACCG 1078
||| ||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||
Sbjct 1017 TTCCAAGACATATCCGGCTAACGTTCCGATCACCGTTGACCACGATCT-TCTATTCACCG 1075
Query 1079 TTGGATTAGGAGTCAACCGATGTCACAGTTGTAAAGCCGGAAACTTCTCACGTGTCGTCG 1138
||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1076 TTGGATTAGGAATCAACCGATGTCACAGCTGTAAAGCCGGAAACTTCTCACGAGTCGTCG 1135
Query 1139 CTGCCATAAACAACATTACATTCAAAATGCCTAAAACGGCTCTGCTTCAAGCGCATTACT 1198
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1136 CCGCCATAAACAACATTACATTCAAGATGCCTAAAACGGCTCTGCTTCAAGCGCATTACT 1195
Query 1199 TCAACTTAACCGGAATATACACAACCGATTTTCCTGGAAAACCAAGACGGTTTTTCGATT 1258
| ||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1196 TTAACCTAACCGGAATATACACAACCGATTTTCCTGCAAAACCAAGACGGGTTTTCGATT 1255
Query 1259 TTACCGGAAAACCGCCTTCGAATTTAGCAACCATGAAGGCTACAAAGCTTTATAAGCTTC 1318
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1256 TTACCGGAAAACCGCCTTCCAATTTAGCAACCATGAAGGCTACAAAGCTTTACAAGCTTC 1315
Query 1319 CATACAATTCGACGGTGCAAGTTGTTTTGCAAGATACCGGAAATGTGGCGCCGGAGAATC 1378
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1316 CATATAATTCGACGGTGCAAGTTGTTTTGCAAGACACCGGAAATGTAGCGCCGGAGAATC 1375
Query 1379 ATCCGATTCATCTCCATGGATTTAATTTCTTTGTGGTTGGTTTAGGAACTGGAAACTATA 1438
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ATCCGATTCATCTACATGGATTTAATTTCTTTGTGGTTGGTTTAGGAACTGGAAACTATA 1435
Query 1439 ATTCCAAGAAAGATTCGAAAAAGTTTAATCTTGTTGATCCGGTGGAGAGGAATACCGTCG 1498
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1436 ATTCCAAGAAAGATTCTAACAAGTTTAATCTTGTTGATCCGGTGGAGAGAAATACCGTCG 1495
Query 1499 GTGTACCTTCCGGTGGTTGGGCGGCGATCAGATTCCGAGCAGATAATCCAGGGGTTTGGT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GTGTACCTTCCGGTGGTTGGGCGGCGATCAGATTCCGAGCAGATAATCCAGGGGTTTGGT 1555
Query 1559 TTATGCATTGCCATATAGAGGTACACACAACATGGGGACTAAAAATGGCTTTCTTGGTGG 1618
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1556 TTATGCATTGCCATTTAGAGGTACATACAACATGGGGACTAAAAATGGCTTTCTTGGTGG 1615
Query 1619 AGAATGGTAAAGGCCCAAACCAATCAATTCTTCCTCCCCCAAGTGACCTTCCCAAATGTT 1678
|||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1616 AGAATGGTAAAGGCCCTAACCAATCAATTCGTCCTCCTCCAAGTGATCTTCCCAAATGTT 1675
Query 1679 GA 1680
||
Sbjct 1676 GA 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5