BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892126
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02140.1 | Symbols: | Pathogenesis-related thaumatin superf... 1092 0.0
> AT5G02140.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr5:423384-424437 FORWARD LENGTH=885
Length=885
Score = 1092 bits (591), Expect = 0.0
Identities = 654/685 (95%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 62 CCTTCACTGATGGAGCTCAGCTTATATTAGTGAATAACTGCCAGGAGAGCATCTGGCCGG 121
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 47 CCTTCACTGATGGAGCTCAGCTTATAATAGTGAATAACTGCCAGGAGAGCATTTGGCCGG 106
Query 122 GAATCCTCGGCGGCGGAGGCCAAATCACACCGAGAAACGGCGGATTCCACATGGGAAGCG 181
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 107 GAATTCTCGGCGGCGGAGGCCAAATCACACCAAGAAACGGCGGATTCCACATGGGAAGCG 166
Query 182 GCGAAGAAACCATAATAGACGTACCGGATAAATGGTCCGGTCGAATCTGGGGTCGACAAG 241
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 167 GCGAAGAAACCATCATAGACGTACCGGATAAATGGTCCGGTCGAATCTGGGGTAGACAAG 226
Query 242 GCTGCATCTTTAACCAAAACGGAAAAGGCTCATGCCAAACCGGAGATTGCAACGGCGGTT 301
|||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |
Sbjct 227 GCTGCACCTTTAACCAAAACGGTAAAGGCTCATGCCAAACCGGAGACTGCAACGACGGCT 286
Query 302 C-ACTCAATTGCCAAGGAACCGGCGGTGTACCACCAGCAACCGTCGTGGAAATGACATTA 360
| | |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 287 CTA-TCAACTGCCAAGGAACCGGCGGTGTACCACCAGCAACCGTAGTAGAAATGACATTA 345
Query 361 GGCTCATCTTCCTCGCCGCTTCATTTCTACGACGTAAGTCTCGTCGACGGATTCAATCTC 420
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 346 GGCTCATCTTCCTCTCCGCTTCATTTCTACGACGTAAGTCTCGTCGACGGTTTCAATCTT 405
Query 421 CCTGTGTCGATGAAACCAATCGGTGGTGGAGTTGGATGTGGTGTTGCGGCTTTTGAAGTG 480
|| |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct 406 CCGGTGTCGATGAAACCAATCGGCGGTGGAGTTGGATGTGGCGTTGCGGCTTGTGAAGTG 465
Query 481 AATTTGAATATTTGTTGTCCATCGGCTTTGGAAGTTAAGAGAGATGGTAAAGTGGTTGGT 540
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 466 AATTTGAACATTTGTTGTCCATCAGCTTTGGAAGTTAAGAGAGATGGGAAAGTGGTTGGT 525
Query 541 TGCAAAAGTGCTTGCTTGGCGATGCAATCGGCTAAGTATTGTTGTACCGGAGAATATGCG 600
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 526 TGTAAAAGTGCTTGCTTGGCGATGCAATCGGCTAAGTATTGTTGCACCGGTGAATATGCG 585
Query 601 AATCCTCAGGCGTGTAAGCCGACTCTGTTCGCGAATCTGTTTAAAGCGATTTGTCCTAAG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AATCCTCAGGCGTGTAAGCCGACTCTGTTCGCGAATCTGTTTAAAGCGATTTGTCCTAAA 645
Query 661 GCTTATAGTTATGCGTTTGATGATTCTAGTAGTTTGAATAAGTGTAGGGCTTCTCGTTAT 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 646 GCTTATAGTTATGCGTTTGATGATTCTAGTAGTTTGAATAAGTGTAGAGCTTCTCGTTAT 705
Query 721 GTTATCACTTTCTGTCCTCCAAAGT 745
|||||||||||||||||||||||||
Sbjct 706 GTTATCACTTTCTGTCCTCCAAAGT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5