BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892135

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52618.1 | Symbols:  | unknown protein; Has 6 Blast hits to ...   313    8e-85


> AT1G52618.1 | Symbols:  | unknown protein; Has 6 Blast hits to 
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr1:19603147-19603662 FORWARD LENGTH=516
Length=516

 Score =  313 bits (169),  Expect = 8e-85
 Identities = 224/251 (89%), Gaps = 1/251 (0%)
 Strand=Plus/Plus

Query  1    ATGTCACCGGAGACTAAAACGGAAGCTCGGATCTTGTTGGTTACCGGTGGCATAGAGTCA  60
            |||||||| || | || |||||||||||||| ||||||| || || |||||| |||  ||
Sbjct  101  ATGTCACCAGAAAATAGAACGGAAGCTCGGAACTTGTTGATTCCCAGTGGCAGAGAACCA  160

Query  61   ATCGCATTAGATCCGGTGGTTTCAAGGTCCACGGCTTTGAGGCAGAGAAGAAGGATTGAA  120
             ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct  161  TTCGCACTAGATCCGGTGGTTTCAAGGTCCACGACTTTGAGGCATAGAAGAAGGATTGAA  220

Query  121  AACC-CCGTTGGAAGAAACCAGTTTCCGACGATGCACCTCACCGTCGACTCGCCAAACCC  179
            |||| || | ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  221  AACCACCATCGGAAGAAACCAATTTCCGACGATGCACCTCACCGTCGACTCACCAAACCC  280

Query  180  GCTACAAACCTCCCAGAAAACTCAACTCTCCGACACACCAGCTCTACGTCGACATATCCT  239
            || |||||||||||||||||||| |||||||||| |||| |||||||| ||| | |||||
Sbjct  281  GCCACAAACCTCCCAGAAAACTCGACTCTCCGACTCACCGGCTCTACGACGATAGATCCT  340

Query  240  GACCAAGCAAT  250
            |||||||||||
Sbjct  341  GACCAAGCAAT  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5