BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892166

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02560.2 | Symbols: HTA12 | histone H2A 12 | chr5:575382-576...   124    5e-28


> AT5G02560.2 | Symbols: HTA12 | histone H2A 12 | chr5:575382-576605 
FORWARD LENGTH=738
Length=738

 Score =  124 bits (67),  Expect = 5e-28
 Identities = 71/73 (97%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  1    ATGGATTCCGGAACCAAAGTGAAGAAAGGAGCCGCTAGAAGAAGAAGTGGTGGAGGTCAT  60
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct  56   ATGGATTCCGGAACCAAAGTGAAGAAAGGAGCCGCTGGAAGAAGAAGTGGTGGAGGTCCT  115

Query  61   AAGAAGAAACCGG  73
            |||||||||||||
Sbjct  116  AAGAAGAAACCGG  128



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5